barSeed - Barley Seed Development Database

Probe CUST_9175_PI390587928

Source Contig U35_6993

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9175_PI390587928	Hv_44K_v2	AGTCGTAGTAGTAACTTGAACCATCAGATCCAATGCATCTTATGCCCATTTGGCTCCAAA	1291	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.259	1.867	1.561	0.917	0.361	0.336
Raw	1624.189	3704.541	2667.570	2419.071	339.552	344.999

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63287.1	2745	3e-22	118 - 176	98	58 / 59	minus	ABC10526 ABC21170
JLOC1	JLOC1_41442.1	2808	1e-22	2616 - 2674	98	58 / 59	plus
Harvest21	ABC21170	1008	1e-24	932 - 990	100	59 / 59	plus	ABC21170
Harvest35	U35_6993	1367	3e-25	1292 - 1351	100	60 / 60	plus

Contig Sequence (1367 bp)

>U35_6993 1367 Hv_44K_v2
TAGCCACACCTGTCCTGAAGGTTGCTGCAAAGGTCATTGGTGAAGTTCAGGCACTGATAG
TTTTCCCAGTTGTGCCGTACTTTATCCTCGCTATCTTTTATATGTTCTGGTTTTCTGCCA
CACTCCACCTCTTCAGCTCTGGCCAGGTTGTCCGAAATGACTGCAGTACAGATTGTTGTT
CCTATGATCTGAAGTTGGGCAAAGTAAACTGTGACAACTGCTGTGGGTACAGCATCCATT
ACACCCCTCATATTGGCATTGCAATTCTTTTCCACTTATTTGGCTGCTACTGGGCTACTC
AATTTTTTATGGCATGCTCTGCAACTGTGGTTGCCGGATCAGTTGCTTCCTACTACTGGG
CCCGTGGTGAAATATCTCATGATATACCGTTTTTCAGTGTTGTCTCTTCGCTCAAGCGGC
TGATGCGTTACAACCTTGGATCTGCTGCCATAGGCTCGCTTGTTGTATCAGCTGTTGAGT
GGGTGCGGTTTATACTAGAATGCCTTCGCCGCAAGTTGAAGCTGGTTGGTTCTGCTCGGG
AGAGCTGCTTTGGGAAAGTGTCATCGTCCTCATCTCAGTGCTGCCGGGGCTGCATCGACT
GGACCCTCATGTCTGTAAATCGAAATGCCTACATAATGATTGCCATCACAGGGAAAGGGT
TCTTCAAAGCTTCGGTGCTCGCTACCGGCCTTATAATGAACAACATACTGCGCATTGGGA
AGGTGAATGTCATCGGGGACGTGATCCTGTTCCTGGGGAAGCTGTGCGTGAGCCTGTTCT
GCGCACTCTTCGCGTTCCTCATGCTCGACACACACAAGTACAAGTCGGCGCACAACAAGA
TATCGTCGCCGCTGGTCCCCGTTCTGGTGACGTGGGGCCTGGGGTACACGGTGGCGAAGC
TGTTCTTCGCGGTGGTGGAGATGTCCATCGACACTATCATCCTGTCCTTCTGCCAGGACG
CGGAGGAGCACCAGGGGACGGCGCAGTACGCGCCGCCTCTCCTCATGGAGACGCTGGACG
AGCAGGGCGAGCTGCAGAGACTCACTCAAGGACCCTGAACTGAATCTCTCTTATTTATTT
TTTCTTTTTCTTAGAACTAGACGTAGAGTGGTGGTAATTTAGTAGAAGCTTTGATAGATC
GAGATTCCTGTCCAAGTAATCTTGGCTGGCTGCCTCCCTGTACGTGTTGTCCAGCTTCAG
CTTGGAGTATCAGTATGTATGTAGGTACGTGTCGCCCCCTGCCCTGATTGGCAAGTGTTG
CATATGACGATGCACTTTGCTGATGGAAACTAGTCGTAGTAGTAACTTGAACCATCAGAT
CCAATGCATCTTATGCCCATTTGGCTCCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_6993 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58470.1	712	0.0	protein\|choline transporter-related, putative, expressed
Brachypodium v1_2	Bradi5g26450.1	713	0.0
Arabidopsis v10	AT3G15380.1	700	4e-175	Plasma-membrane choline transporter family protein \| chr3:5193319-5196435 FORWARD LENGTH=700