barSeed - Barley Seed Development Database

Probe CUST_9164_PI390587928

Source Contig U35_6999

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9164_PI390587928	Hv_44K_v2	TTGGTTACGTTGAGCGGCTAGCTAGCCTTGCCGGAGCTAGCTAGGAGCTACTAGCTGTTG	114	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66252.1	1699	2e-24	349 - 408	100	60 / 60	plus	ABC15395 ABC15396
JLOC1	JLOC1_43638.1	1826	8e-25	285 - 344	100	60 / 60	plus
Harvest35	U35_6999	559	3e-25	115 - 174	100	60 / 60	plus

Contig Sequence (559 bp)

>U35_6999 559 Hv_44K_v2
AAGCAAAGTGTAGTAGCGAGCGGCGGCCACTCTCTCGATCTATGCCTCGTCTGCTACTTA
TAAAACAAAGCTCTACGCGCGCCGGCACATCGATCGCATTACGCAGCTCGCTGGTTGGTT
ACGTTGAGCGGCTAGCTAGCCTTGCCGGAGCTAGCTAGGAGCTACTAGCTGTTGCGCATT
GCCGGGCCAGCTCGTCCGCTCTCGACCGTACGTAATGGCGCAGCTCCCGCCCAAGATCCC
GATGGCTGCCGGGGCGCACCACTGGCCCGGCGCCGGAGCCGGCGTGGAGCACCATGGCCA
CGGGCCCGCCGTGGTGTGGGCGGACGAGTTCGCCGAGTTCGCGGCGGCGCGCCGGGGCGC
GCACCGCAGGTCGCTGAGCGACTCGGTGGCCTTCGTGGAGATGGCTCCCGGGGGCTGCGG
CGGGGCCGGCGACTTCGACAGGCTGGACGACGACCAGCTCATGTCCATGTTCCCCGACGA
GGGCGGGTCGACGGCCCCCGGGTCGGAGAACGCACCAGCGACAGCGACGGCAGGAGCGTA
CGACGAGGGCAGACGACAT

Homology of Contig U35_6999 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None