barSeed - Barley Seed Development Database

Probe CUST_9162_PI390587928

Source Contig U35_3008

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9162_PI390587928	Hv_44K_v2	CACACTCAACTCTTCTACTCAGGGGTACTTCGGACGAGGAATGAAGATACTGTTTGTTTG	1844	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248495.1	1944	2e-24	1843 - 1902	100	60 / 60	plus	ABC07571
MLOC	MLOC_52595.1	2253	2e-24	249 - 308	100	60 / 60	minus	ABC07571 ABC35100
JLOC1	JLOC1_33718.1	2262	8e-25	1837 - 1896	100	60 / 60	plus
Harvest21	ABC07571	1079	3e-25	961 - 1020	100	60 / 60	plus	ABC07571
Harvest35	U35_3008	1963	3e-25	1845 - 1904	100	60 / 60	plus

Contig Sequence (1963 bp)

>U35_3008 1963 Hv_44K_v2
CGCGTCCCTTCCGCCCGTGGGAAGGGAAGAGCAGCGAGCCGCCGCGCCGCGCCGCACCAC
CGTCTCCTCCTCGCCCGCTGCTCTGCTCCCCCTCCCCGATCCGATCGCCGCCGGCGCGGC
AATATTTGGAACCCTCGGTGCCGATCGACCCATGCCGTACCACTGAGAACCGATCCCGCC
GCCATCCGCCGTCGTCATCCCCGTCGACCGCCTCCGCGTTTATTCATCGGCCCGCGGAAC
CGGCACCGCCCGATCGGATAGAAGGAGGTGTGGGGGATGGCTTCCGTTGCCGCCGACCCG
CAGGCTGCCCTCGCTGGCGCGGGGACGCCGCCCCACTCCGGTAGCCCCGTCGCGGCGAAG
AGGGCGGCCGCCACCGCGTGGAAGCGCCCGGAGAACGGGCCGGTGCTGGTGGCGCCCGGG
AGCCCCATCATGGACGCCGACTCCTGGCCGGCGCTTCCTGGGCTGGCCTCTCCCCAGCCG
CCCACGCCGCCCAAGGCGTCGCCTAAGGCCACTCCTCCCCCTTCCACTGTGGTGGCAATG
ATCTTGCCCGTGTCTTTGGACAACTCCGGCGCCCCGGATGCTATCCCTGACAAGGACGCA
CTGGCGGCGGTGATTTCACCGGTGTCTTTGGACACCGCCGGTGCTCCGGATGCTACCCCT
GACAAGGATGCCCTGATCAGTAGTCTACCAGTCCGGCGTGTGCTGATGATGCCTGCAGGG
GATGATAGTCCAGACATGCATGCTCCTGTTCCAGAGCTATCTCCAGGGTACTCCCCTAAT
GCCCGGAGCAATGGTACCGGTGTTCATCATCAGAATGGCCGTGTTGGTTCCCATTCTCAT
GGCCGTGGTGGCAGTTATGGTGGGGGGAGCAGAAGGGGTAATGGTGGAGGTGGTAGTCGT
CATGGTCATGAGCACCATGCTGGGTTTGATGGGCAACGGCGTGGTGGCGGCCGTAGAGAT
GGACATGGGCCAGGGCACCAACATCGTGTTCACCAGCCATCGTACATTAGGGCTCCTCCT
TCCCTGGCTGTTTTAGCGGCGGGACCTCCCGCGCCACCATTTGCTGGCCCTGCCACGCCA
CAGACACCACCTTATGGGACTGCTGCTCCACAAACGCCACCTTATGGGGCGCCTATGGGA
TTCCCTGCAGAGATGGCACCTCATGTTTACTATTTTGCCGTGCCCACCTCGGATGGCCTT
CAAACCCTTCCTTTTGCGCCGCCTACACCAACCCCTCCAGCCATGCTAATTTCTCCACTG
GAACAACTTCAGAGGGAGCTACTGGTGCAGATAGACTACTACTTTAGCGATGAAAATTTG
TGCAAGGACATATTCTTGAGGGGACATATGGATGACCATGGTTGGGTGCCATTGTCCTTG
ATTGCTGGCTTTAACAAGGTCCAAAGGCTCCTATATCGTATTGGGCAAGTCAAAAACTTG
ACCAATGGCTTACAGTTTATCTTGGATACAGTCATGCAGTCTACTGTGGTGGAAGTACAG
GGTGACAAAATACGGAGGCGTGTAAGATGGGAGGTTTGGTTGCTTCCAAGATCAAATTAT
TCTGCTGGAATTTTTTCTGGTTCACGTTCCCCCGTGACATCCAACATTGATTCATTGGCG
TCTCAGTTTCAATCTGTTGGACTTGAGGGGACATACTATCCTCGTGAAGCTCTCCTTACT
AGATCAGCAACTTCAGTTAGTATAGGCTATCAAGCACCTACCTTCAGAGGACTACACAGC
AATGGCAGTGGACCCATTTTTGGGCAGCAGACCGAGAGAAGTTTACTCAGGAGCGATACC
TTTTGATACACAACAAAGATATGCCGAGTTTTCACTGGTTACGGCACACTCAACTCTTCT
ACTCAGGGGTACTTCGGACGAGGAATGAAGATACTGTTTGTTTGAAAAAAAGAGCATAAA
AAAAAGAAAATATAGATGGACATACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g06070.1	482	1e-95	protein\|la domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g74700.1	482	1e-145
Arabidopsis v10	None