barSeed - Barley Seed Development Database

Probe CUST_914_PI390587928

Source Contig U35_6360

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_914_PI390587928	Hv_44K_v2	GGACTTCACTTGATCGAATCGAATTGCAGGAGCTATCTTAAATTCTTAATTAGATTCATG	1178	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.944	5.824	1.493	0.595	0.162	0.147
Raw	405.403	501.717	107.302	70.328	5.477	5.078

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66104.2	1327	2e-24	1192 - 1251	100	60 / 60	plus	ABC21771
MLOC	MLOC_66104.1	1591	2e-24	182 - 241	100	60 / 60	minus	ABC21771
JLOC1	JLOC1_43548.1	1727	8e-25	1234 - 1293	100	60 / 60	plus
Harvest21	ABC21771	478	3e-25	375 - 434	100	60 / 60	plus	ABC21771
Harvest35	U35_6360	1282	3e-25	1179 - 1238	100	60 / 60	plus

Contig Sequence (1282 bp)

>U35_6360 1282 Hv_44K_v2
CTTTCTTCCCTCCGAAGAAGACCCACCCACGTCCGGCCGGCCTCAGAGCGAGCGAGCGAG
CGAGAGAGAGAGCGGCCATGGCGGGCAAGGGGAGCAAGAAGGACATCGACACCGTGCTCA
TGCAGGCCATGCTGGCCGCCAAGACGGTGCGTGCACAGCGCGACCGCCTCCAGCAGCTCC
AGCACCGCCTGCAGGACCTCCAGGCCGACGCCGACGCCGACAAGGACAAGATCGGGGACC
TCGCCTCCAACCTCTTCAAGGTCTACTACATCGGCCTGGAGGCCGGTGCCCGCATGCTCA
CCACCTGCATCCACCTCGCCGCCAAGAAGAGGATCGCCGGCCTCTCCCCGCCCAACATGG
CCATGGCCGTCATGAACGACGAGCAGCTCCACGACGCGCTGCTCGCGCAGCAGTTCCCGG
CCCGCCCTAGGTCCCAGGCGCAGGGCCTCGACCGCATCATGGCCGCCGTCCTGGCCATCA
AGCTGCTGGAGGAGCACCTCCTCCCGCGCTGCGTCGAGTGCCTCGCCGGCGGCAAGGCCC
CCGTCCCCGGCAAGACCCCCGAGTCCTCCTGGCCCGACAGCAGCCCGGACAGGGACGACG
ACGACGACCCGGTCGCCGCCGCCGCCGAGGCCCTCGCCAAGGTCGACCTCTCCGACGGCC
CAGACGCAACCGCCAAGTCCGGCTCCAGCAAGCAAGCCAGAGGCGGCGGCGGTGAGGTGG
GCAAGGCGCTGGACTACATGTACCGCGCGTGCAGGATCGCGAGCCTCGCCGTGAAGCACA
TCGACGTGGGCGTCTCCGTGCTCTCCCGCTTCATGGAGCCCAAGAAGCTGGCCAGCCTCG
CCGAGTTCTGCGCCGACCACGCCTACATCTCCGAGGAGGGATTCTATCTGGCATCCGATT
GATCGATCGACGCTGTGCTGATCCAAGCCATATGCATGCTCTCCTTATCATCAGTCTTTT
AATTTACCATCCATCCAGATCCAGGCCTGTGGTTTCAGTTCAGTTTCGTCAGATTTATGT
GCTGCCTGCCATGCTCTTCTATTCGTATTCAGTTTGGTCAGACTTGTGGTTCCTGGACGG
CCAGCATGCCTATCTAATCTATCTCAGCTTCATCAATTAGCTAGGGGAAACCAATGTAGT
AGTATTGTAATGTTGATCTTCATCTTATCTTATCTGTGGGACTTCACTTGATCGAATCGA
ATTGCAGGAGCTATCTTAAATTCTTAATTAGATTCATGTATGGTGCTAGTTCAATATCGC
ATTTGGGAAAAAAAAAAAAAAA

Homology of Contig U35_6360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None