barSeed - Barley Seed Development Database

Probe CUST_9144_PI390587928

Source Contig U35_18845

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9144_PI390587928	Hv_44K_v2	CTTTCAGACTTGTCAGCCACGTGAGTTCCAAATGCACAATTTTTCTTTTGTAAATTATGA	1123	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354319	1815	2e-24	1667 - 1726	100	60 / 60	plus	ABC10646
MLOC	MLOC_34922.1	163	2e-24	32 - 91	100	60 / 60	minus	ABC10646
MLOC	MLOC_30289.1	450	2e-24	321 - 380	100	60 / 60	plus	ABC10646
JLOC1	JLOC1_20055.1	442	8e-25	314 - 373	100	60 / 60	plus
Harvest21	ABC10646	1240	3e-25	1125 - 1184	100	60 / 60	plus	ABC10646
Harvest35	U35_18845	1238	3e-25	1124 - 1183	100	60 / 60	plus

Contig Sequence (1238 bp)

>U35_18845 1238 Hv_44K_v2
GGAAATTCAAGGTTTCGTATGACAAGTTGGTCTTTGGATGTGGGGCTGAGGCATCGACTT
TCGGTATACGTGGTGTTACTGAACATGCAACCTTTCTTCGGGAAGTACACCATGCTCAAG
AGATTCGCAGGAAGCTCCTTCTTAATCTGATGCTGTCTGATGTACCTGGCATATCAGAGG
ACGAAAAACGCAGGCTCTTGCACTGTGTTGTTGTTGGAGGTGGTCCAACAGGGGTTGAAT
TTAGCGGGGAACTTAGTGATTTCATCATCAGAGATGTGAAAGAACGTTACTCGCATGTGA
AAGATTACGTCCATGTGACCCTGATCGAGGCAAATGAGATATTGTCATCCTTCGATGTTC
GACTCAGGCAGTATGCTATAAACCAACTAGTTAAGTCAGGTGTTAGGCTTGTACAAGGAA
TCGTGAAGGATGTACAACCCGACAAATTAATCCTGGACAACGGAGAGGAGGTTCCTTATG
GTTTGCTTGTATGGTCTACTGGAGTTGGTGCTTCATCATTCGTCAAGTCATTGCCATTTC
CTAAGTCAGCTGGAGGAAGGATCGGTGTAGATGAGTGGTTACGTGTTCCTTCAGTGCCAG
ATGTATTCGCTGTTGGTGATTGCTGTGGATTCCTTGAAAGCACTGGCAAGGAAGTTCTCC
CAGCCTTAGCTCAGGTTGCCGAGCGACAAGGCTTGTACCTTGCTCGCCTGCTCAACAGTG
TGATGAAAGCTGGAGGAGGGCATGCAAACTCCCAGGTTGAAGTTGATCTAGGTCCAAAGT
TTGTGTATAAGCATCTAGGGAGTATGGCAACCGTTGGAAGGTACAAAGCTCTGGTGGATC
TGAGGCAAAGCAAGGGCTCGAAGGGCATATCCATCGCAGGATTTGCAAGCTGGTTCATCT
GGCGCTCGGCATACCTGACTCGTGTTGTCAGCTGGAGAAATAGGCTCTATGTGGCTATCA
ACTGGCTGACCACGATGATATTCGGCCGTGACATAAGCCGTATCTAGGGTATCTATCTGT
AGATATCTGGGATCTGAACCGTACGGACTACATACGAACGCTAAAAGAAACATAGGTCTT
GATCACATTGCATCTTTTTTCCCTCCTGCTCCTCTCTCTATCCCTTTCAGACTTGTCAGC
CACGTGAGTTCCAAATGCACAATTTTTCTTTTGTAAATTATGAATAAATGAGAATGAGAT
GCAATTTGATGGTCTTCAAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18845 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g61410.1	500	protein\|NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi2g53970.1	497
Arabidopsis v10	AT1G07180.1	510	\| Symbols: ATNDI1, NDA1 \| alternative NAD(P)H dehydrogenase 1 \| chr1:2204414-2206773 FORWARD LENGTH=510