barSeed - Barley Seed Development Database

Probe CUST_913_PI390587928

Source Contig U35_6361

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_913_PI390587928	Hv_44K_v2	TGGGCTACACATTAGGATCATTTCTGAATTGTCATTACTGAATGAAATCCATTATCGGGG	788	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364742	1776	2e-24	1617 - 1676	100	60 / 60	plus	ABC14225 ABC47294
MLOC	MLOC_44565.1	997	2e-24	808 - 867	100	60 / 60	plus	ABC14225 ABC47294
JLOC1	JLOC1_28889.1	981	8e-25	807 - 866	100	60 / 60	plus
Harvest21	ABC14225	856	3e-25	789 - 848	100	60 / 60	plus	ABC14225
Harvest35	U35_6361	856	3e-25	789 - 848	100	60 / 60	plus

Contig Sequence (856 bp)

>U35_6361 856 Hv_44K_v2
TTGAATTAGTGGCTTTTCATTTCATCACATGACTAGCTTGACTAGAATTATGATATTAGT
GTTTCAAGATTAGTTTGTCTATGCGTTCAACCTATTTTGTCATCTATCTTACCTTTGCAT
TTTGTGACTGCAGTTATTCATCGTACTATCATGCATCATCGCCATTGGTGTTAATCTGAG
CCAGTTCATCTGCATTGGCCGGTTCTCCGCTGTATCTTTTCAAGTCTTAGGCCACATGAA
GACCGTGCTGGTCCTGTTCCTTGGCTTTCTCTTCTTTGGCAAGGAGGGCCTGAACCTTCA
TGTAGTCCTTGGGATGATCCTCGCTGTTCTTGGAATGATGTGGTATGGGAACGCATCAGC
GAAACCAGGCGGCAAAGAGCGTCGGAGTGTCCTCCCAGTGAGGTCTGAGAGGCACAATGG
AGGTTCAGAAGACAAAGATGGTGGTGAGAAGTGATTTTTGCAATCGGCAACTGCAGTGCG
TGCATATTTTTTCCCTTGAGGTTTCTGGTGACACACAACACAGCGAAGGAAGACAGTCTG
GTATTGTTCTTGATAGAGGTTACTACAGAAGCTGAACGTTACCCCACCTAGGAAGTCGGC
ATTGTTCTCGTTATAGGTTACATACATTACCGTCATTTTTTTTCGATCTCTGATACATTT
ATAGTCACCAGATGTTTTACAAGGTTTGAGTATAGTATAATCCTTTAGAAGTAAGTCGCA
TATGAAGGTTGTGGAATTGCGGTGAAGAATGTTGGAAGTTAAGGCGTTGTTTTGATCTTA
TGGAAGTATGGGCTACACATTAGGATCATTTCTGAATTGTCATTACTGAATGAAATCCAT
TATCGGGGTTTTATAG

Homology of Contig U35_6361 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None