barSeed - Barley Seed Development Database

Probe CUST_9138_PI390587928

Source Contig U35_18851

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9138_PI390587928	Hv_44K_v2	GATTGTTAGATCCATTCCTGGCAGATGGGCGGATGGGAATTTTTCAAAGCCAGCAAAAAA	1757	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.269	1.483	1.356	0.840	0.359	0.416
Raw	1207.189	2178.726	1767.463	1720.120	256.930	324.229

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37058.1	768	3e-22	663 - 718	100	56 / 56	plus	ABC10886
JLOC1	JLOC1_23949.1	744	1e-22	663 - 718	100	56 / 56	plus
Harvest35	U35_18851	1828	3e-25	1758 - 1817	100	60 / 60	plus

Contig Sequence (1828 bp)

>U35_18851 1828 Hv_44K_v2
GGAACCAGGGACATGCTGTCATCATCATCTAGTGCTATGGTATCCATGGCTTCTCAACTG
TCTGAAGCGGAGGAGCGGGAGCGGGTGCTCAGTGGTAGAGGCAGATGGAACCATGTAAGG
TCCCTGCCTGACGCAAAGAACATAATGAATTACCTTTATCAGTTAGCATCATCTTCAAGA
TGCCAACTACATGATAAGGACGTGATGTGTATGGATAAGGATCTCGTCATTGGTGAACTG
AAAGAAAAGGTGGTTTCGCTTAATGGCAGAACTAGACAGTTGGAAGCACAAGTTAATGAT
CTACATAACCAAAATATGCAGCTTTTCACTGCAATGAACAATGCGAAGAAATCTGGTAGG
GCCTCAAGGTGTGATGCTACTATTGATCCAGAAGATGGTCAAATTTATGCTTTGCGGAAG
AGTGCTCGAGGTAAGAATTCCTACTGGTCGGATGACATGGAAATATCAGATGCCGAGGAG
TCGGGAGAATTAGAAGATATGAGTGATGATGGATCTGATACAGATTGGGTAGAGTCATCC
AGGAAAGTCAATAATACACGGCGGCGAACATCCAACCCAAGTAGCAATAATTCACTTGCA
GATGTTAAGTCTCAGAAGCCCAGCGAGGAAATTCCCACTGCCCAGAAAGAGCATGCTCCT
TCACAGTGCTGCTCGTGTTCATCAAAATCATTGTGCAAGCTCACCAGATATTGTGAGTGC
AGAGCTCTAGGTTCACAATGTGGTACTGGCTGCGGGTGTAATGCTTCGAAATGTTCCAAT
AGGGTGCGCGTCATCAAGGAAGAAATAGACGATGAACCACCATCTGAGAAGGAAGGTAGC
GAGTTTGGTAATGTTTCTTCTTCAGAGAATGATGCCAAGATGAAGGAAGATGTGAAGCAA
GGAATCATGCTTCTTGAGAATGCTGTGGCTGAGAAGGAAGCTCAGCAGCCAAAATCAAGA
AAACCATTGGCGGACATTGGAAACACAGATGTGAAACAAGGTGGGGCAAAACCGAAGCAG
AGGAAGAACTGGCGCAAGACGGCAACAATCCAGCTCGTCCCCACCGAGCCTCCTCCACCG
ACCTCTGCACCAGATAACTCTGAAGCTGCTCCGCAGAACAGGGCCGACATTCCCCTGAGG
CTGCCGAGGGCAATGTCTGCCGCCGTGGACAGCAACCCTCTCACGGACCGCAACGCCGCC
AAGGCAGGCGAGTCCGTGAGCAGCAACAAGGAGAACGGCAGCCTTGCCACGGCGAGGGCA
CCGGCTCCGCCCCCTGCTCGGTTGCGAAAGAACGCTGCCATGGAGAAGGAGAACCACCTG
GGATGATCGATCGTCAGCCTGCTAGTGTGACGAGCGTGTTGGGGAGAGATTGCAGAAGAG
GACGAGGTTAAACTGTCATAACCGACGAGCACCGAGACCCCCCCGTGGAGATGATCGGTT
GGGTCCTTTTGCCGAGCCAAGAATTGTGTTTTCTGTGGCATCCGAGCGAGAGCGGAGTAG
CATTTCTGTTTTCTGTAGCCGGTTCTCCCGGGGAATGTCTGTTAAGTTAAAACTGGGAGG
TTCAGATGTATGTTTGTTGTGAAGCCAGTTTTGCTGGCTGGCTCGTGTACTGCGGTGGGA
GGTTACCTGACAGATAACAGTTTCTCTGCTGTTGCCTAAATAATTGTAGAGTAGTTGGGA
AGAACTAGTTTAGTTTTTTCCAGATATAATTATTTAGGTATATATATGCCTGTGTGTGCG
TTGGTCGCGGTACACTTGATTGTTAGATCCATTCCTGGCAGATGGGCGGATGGGAATTTT
TCAAAGCCAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18851 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50910.1	552	4e-117	protein\|expressed protein
Brachypodium v1_2	Bradi1g24560.1	1233	5e-167
Arabidopsis v10	None