barSeed - Barley Seed Development Database

Probe CUST_9133_PI390587928

Source Contig U35_18856

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9133_PI390587928	Hv_44K_v2	AAGTAGTAGTAGTAGTAGAAGATCGACCTAATCTGCAACTCATGGGAGGCGCAAGATGGT	116	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	16.158	14.500	1.616	0.345	0.790	0.704
Raw	157.541	204.511	18.722	3.340	2.909	2.961

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366089	4041	2e-24	3034 - 3093	100	60 / 60	plus	ABC16765
MLOC	AK367568	4634	2e-24	3082 - 3141	100	60 / 60	plus	ABC16765 ABC16766
MLOC	MLOC_76363.1	1916	7e-23	1602 - 1661	98	59 / 60	minus	ABC16765 ABC16766
JLOC1	JLOC1_50926.1	1916	4e-23	1602 - 1661	98	59 / 60	minus
Harvest21	ABC13501	600	3e-25	54 - 113	100	60 / 60	plus
Harvest21	ABC13500	564	1e-23	104 - 163	98	59 / 60	plus
Harvest35	U35_18856	664	3e-25	117 - 176	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_18856 664 Hv_44K_v2
CTGGATGTCGACCTTCACCTTCCCTTGTGTAGTTGCGTGCGTGTGTGCTTCATACACACA
CCCACACACACACTGAGACCTCGATGGTTACAGAAACCCCAATAGCTCCCATAATCAAGT
AGTAGTAGTAGTAGAAGATCGACCTAATCTGCAACTCATGGGAGGCGCAAGATGGTGCCT
TGGTGCTGAACTCTGGACGCCCAAGGTCAAGGTACACTCCTCGGCCTCCTGTTCGTCGCA
GCACCGGCTACTCCGACAAGACACGCCGTCCGCCGGTGCCCCTCCAGCCGAGGCGGCGGC
CGTCCGAGTAGAAGTAGTCAAAGACCAAGGCGAAGGGGAAGAGCACAGGAGCCAGCAGAG
GGAGGTGTTCACCATCTGGATGAAGTCGCTGGTGCTCAACGGGAGCGGCTGCACGGTCTT
CGACTCCCGCGGGCGCATCGTGTACCGCGTGGACAACTACGGCTCCCACCGGTCCGTGGA
CGTGTGCCTCATGGACATCACGGGGAGCGTGGTGCTCCAGGTCCTCAAGAAGTTCAGGAG
GTGGGAGGGGTACAGGTGCGGCGGGTGGGAGGCCGAGCCGCCCGAGCGCGCCCGCGCCGC
CGACACGCCGCGGCGGCGGCCGTGGTTCACGGTGGTGAGCAACAAGTGGGGCAGCGGCCC
GCGC

Homology of Contig U35_18856 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None