barSeed - Barley Seed Development Database

Probe CUST_9124_PI390587928

Source Contig U35_18866

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9124_PI390587928	Hv_44K_v2	CTACCGTCTTGGCTCTTGTTACTCTGGTTAAAGAAAGTTTTGCTTTAGCACCTATACAAA	665	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.949	1.663	1.160	0.770	0.210	0.199
Raw	8548.473	11604.777	6937.880	7185.513	713.791	727.316

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248907.1	1882	6e-24	1757 - 1815	100	59 / 59	plus	ABC13151
Harvest21	ABC13151	808	1e-24	112 - 170	100	59 / 59	minus	ABC13151
Harvest35	U35_18866	835	3e-25	666 - 725	100	60 / 60	plus

Contig Sequence (835 bp)

>U35_18866 835 Hv_44K_v2
TGGCAAGGAGGCAATCAATAGCTGTACAGAAGCACTCAGCATAGATGAAGAACTTGTTGA
TGCTTTGGCACAGAGAGGTGAAGCTAAACTTCTGACAGAAGATTGGGAAGGTGCGGTTGA
GGACCTAAAAGAGGCTGCCCAGAAATCCCCACAGGACATGGCAATCCGGGAAGCGCTCAT
GAAAGCTGAAAGGCAGCTGAAGCTCAGCAAAAGGAAAGACTGGTACAAAATCCTGGGCAT
TTCGAAGACAGCATCGGCCGCGGACATCAAGCGCGCGTACAAGAGGTTGGCGCTGCAGTG
GCACCCGGATAAGAACGTGGAGAACCGTGAGGAGGCGGAGAACATGTTCCGAGAGATCGC
CGCGGCATACGAGGTGCTTAGCGACGAGGACAAGCGTGTGAGGTACGACCGGGGAGAGGA
CCTGGACGAGATGGGCATGGGGGGAGGCGGCGGCGGGTTCGACCCGTTTGGTGGAGGCGG
TGGGCAGCAGTACACGTTCCACCACGGGGGAGGGTTCCCCGGAGGCGGATTCCAGTTCAA
CTTCGGTTAAAAGCAGGCCAGGCTTCCCTGATGATGTCTTAGTTTCTTGTCATTACTGCT
TTAGGAGGGAGAGCTTAACGGCAACATGTGTTAATTATATATTATCTACTAGCAAAGAGC
TTTTACTACCGTCTTGGCTCTTGTTACTCTGGTTAAAGAAAGTTTTGCTTTAGCACCTAT
ACAAAAAAAAAAACTTGAGATTAATTGTAGTAATACTGTATTATGATCATAGCCGATGAT
TNTGTGATGCATCGACCACTTGATTGGAAATAAGGTATGCTGCTCCTATTAAAAA

Homology of Contig U35_18866 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g74580.2	457	2e-85	protein\|dnaJ homolog subfamily C member, putative, expressed
Brachypodium v1_2	Bradi2g62730.1	468	2e-87
Arabidopsis v10	AT5G03160.1	482	5e-69	\| Symbols: ATP58IPK, P58IPK \| homolog of mamallian P58IPK \| chr5:750286-752671 FORWARD LENGTH=482