barSeed - Barley Seed Development Database

Probe CUST_9116_PI390587928

Source Contig U35_18874

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9116_PI390587928	Hv_44K_v2	ACATTCTTTTCTTTCAGCCCTCCCAGTGAAAGATTCATGTTACATTATCATCTCATCAAT	1612	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.428	1.419	1.117	0.870	0.339	0.361
Raw	570.126	900.559	613.656	772.029	103.213	119.579

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71594.1	2235	2e-24	27 - 86	100	60 / 60	minus	ABC12225
JLOC1	JLOC1_47592.1	2793	8e-25	2648 - 2707	100	60 / 60	plus
Harvest21	ABC12225	1030	3e-25	924 - 983	100	60 / 60	plus	ABC12225
Harvest35	U35_18874	1753	3e-25	1613 - 1672	100	60 / 60	plus

Contig Sequence (1753 bp)

>U35_18874 1753 Hv_44K_v2
CAGAATATATCCGTCTTGGTGCACGTCCTCCTCGAGGTGTCTTGTTGGTGGGCCTTCCAG
GAACTGGAAAGACACTCCTTGCTAAAGCTGTAGCAGGGGAAGCAGAAGTTCCATTCATAA
GTTGTTCTGCAAGTGAATTTGTGGAGCTATATGTAGGCATGGGAGCAGCTCGAGTACGTG
AACTGTTTGCTAGGGCCAAAAAGGAATCACCATCAATTATTTTTATTGATGAGATTGATG
CTGTGGCAAAAAGTCGTGATGGCCGGTACCGTATTGTCAGTAACGATGAGCGTGAGCAGA
CACTAAATCAACTGCTCACGGAAATGGATGGTTTTGATACCAACTCAGCTGTCATTGTAC
TTGGAGCAACAAACAGGGCAGATGTTTTGGATCCTGCCCTTCGGCGCCCAGGGAGATTTG
ACCGTGTAGTCACGGTTGAAGCTCCCGATAAGTTTGGAAGAGAATCTATTCTGAAAGTTC
ATGCAAACAGGAAAGAGCTTCCGCTTGGTAAAGATGTAGATCTCAGCGGCATTGCAGCAA
TGACAACTGGTTTTACTGGGGCAGACCTTGCTAATTTAGTGAATGAAGCTGCTTTGTTGG
CCGGAAGATCAAATAAAGAAATAGTGGAAAAGATTGATTTCATCAGTGCGGTTGAGCGCT
CTATAGCTGGCATAGAGAAAAAAACATGTAAAGCTGAAGGGCAATGAAAAGGCTGTTGTT
GCACGGCATGAAGTTGGTCATGCAGTTGTGGGAACTGCTGTAGCAAATCTGTTGCCAGGC
CAGCCACGTGTGGAGAAATTGAGTATACTGCCGAGGTCAGGAGGTGCACTAGGCTTTACA
TACACTCCTCCCACGACAGAAGATAGATATTTGCTCTTTGTTGATGAACTGCGTGGCCGT
CTGGTGACACTTCTGGGTGGGCGGGCAGCAGAGGAAATAGTTCTAGCAGGACGGGTTTCT
ACTGGGGCACTTGATGACATCAGGCGTGCAACTGACATGGCTTACAAAGCCGTAGCAGAG
TATGGTCTTAATCAGCGCATAGGTCCAATATCACTAGCTACATTGTCAAATGGTGGGCTA
GATGATTCTGGAGGCTCTCCATTTGGAAGGGACCAGGGCCATCTGGTTGATCTTGTCCAA
GGGGAAGTAAAAGCACTTCTACAATCAGCACTTGAAGTTGCTCTTTCAGTTATCCGTGCT
AATCCAGCAGTTTTGGAAGGACTTGGAGCATATTTAGAAGAGAATGAAAAGGTTGAAGGC
GAGGAGCTACAAGAGTGGCTTAAGTCTGTCGTTGCCCCAGAAGAATTGACCTCTTTTATT
ACAGGAAAGCAAGAACATGTTCTTCAGCTGGAAGTAGGCCCCTAGCATCAGGAGTATAAA
TTGGAGTCTTAGCCTTAATTAATTTAACCTAGCGTCAACCGCTAAAACTCTGTAAATCCG
GAAGGATTCAATGAAAGTCCACATGCCCAAGTGATGCTGTATATATATACGGATTATCGA
GTTCTAACCTCCAGAATATTGTAAGTCCATCTGTTTGGCCATTGGCTCTACAATGTTGTT
ATAGAGATTAGGTGGGTGGTGCACATGTAAAAGAACATTCTTTTCTCTTGCTACATTCTT
TTCTTTCAGCCCTCCCAGTGAAAGATTCATGTTACATTATCATCTCATCAATTATTAATA
GAAATAATTCATATATGGGTAGCATAGCGGCCGCTCGAGCATTTTCGAAAGGGCCCAATT
CGCCCTATAGGAG

Homology of Contig U35_18874 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43350.1	823	4e-126	protein\|OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed
Brachypodium v1_2	Bradi3g50240.1	812	1e-129
Arabidopsis v10	AT3G47060.1	802	6e-117	\| Symbols: ftsh7 \| FTSH protease 7 \| chr3:17332999-17336613 FORWARD LENGTH=802