barSeed - Barley Seed Development Database

Probe CUST_9108_PI390587928

Source Contig U35_18882

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9108_PI390587928	Hv_44K_v2	ACAACACCACGTTCAAGGCGTACGCCAAGACCGGCGTCGACTTCAAGGAGTACCACAACA	70	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374189	2037	2e-24	1120 - 1179	100	60 / 60	plus	ABC10778 ABC32013
MLOC	MLOC_44072.1	2455	2e-24	1481 - 1540	100	60 / 60	minus	ABC10778 ABC32013 ABC43508
JLOC1	JLOC1_28529.1	2089	8e-25	1115 - 1174	100	60 / 60	minus
Harvest21	ABC10778	1234	3e-25	71 - 130	100	60 / 60	plus	ABC10778
Harvest21	ABC46279	305	1e-23	57 - 117	98	60 / 61	plus
Harvest35	U35_18882	615	3e-25	71 - 130	100	60 / 60	plus

Contig Sequence (615 bp)

>U35_18882 615 Hv_44K_v2
GTCGGTTTCAAAGGCTACGGCCAAGGCACCAACCGCAACCACGAGATCGGGTTCAAGGCG
TACGCCGGCGACAACACCACGTTCAAGGCGTACGCCAAGACCGGCGTCGACTTCAAGGAG
TACCACAACACGTTGGCGGAGGCGACGACGGCATCGACATCCGAGCAGCAGCAGCATCAG
CGGCATGCGACGAAGTGGTCACCGGAGCCGGGAAAGTTCTTCAGGGAGAGGGAGCTGGTG
GCCGGGAACCGAATGCCGATGCCGGACATCCGGGACAAGATGCCGCCGAGGGCGTTCCTG
CCGAGGGACCTCGCCAGGAAGATCCCGTTCGAGGCGAGCGCCGTGTCGGAGGCCTTCGGG
GCGCCGCCGGACACGGCGATGGGCAAGGCGGTGGCGTCGACGGTGGCGGAGTGCGAGCGC
GCGCCGAGCCGGGGCGAGACCAAGCGGTGCGCGACCTCGGCGGAGGACGTCGTGGACTTC
GCGGTGGAGATGCTGGGGGACGACATCGTGGTGCGCAGCACGGCCTCGACGGCGGGCAGC
GGCGCGGAGGTCAGGCTGGGGGACGTCACCGGCGGGAAGGCGGCGCGGGCCGTGTCGTGC
CACCAGAGCCTGTTC

Homology of Contig U35_18882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g29200.1	628	3e-100	protein\|BURP domain containing protein, expressed
Brachypodium v1_2	Bradi3g34950.1	624	1e-102
Arabidopsis v10	None