barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_90_PI415269222Hv_44K_v2GAAACCATGGGATGTTTCCTACCTTTTTGTTGTCTTGCTCATCTTACATCATCTCGATTT1552GeneList: purple
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0350.0730.8821.9241.2531.462
Raw 71.369246.0582545.7308558.6631982.0632478.687



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37389117112e-241643 - 170210060 / 60plus ABC04135
MLOCMLOC_55199.214132e-241306 - 136510060 / 60plus ABC04135
JLOC1JLOC1_35595.215328e-251300 - 135910060 / 60plus
JLOC1JLOC1_35595.115588e-251326 - 138510060 / 60plus
Harvest21ABC0413514001e-2334 - 949860 / 61minusABC04135
Harvest35U35_1575817512e-211695 - 17519856 / 57plus



Contig Sequence (1632 bp)

>TA34617_4513 1632 Hv_44K_v2
GATTCCCTCCCCGGTTCTCGTTTCCAGACACTCCAAACCCCGCCATGGCGGAGCGGCTCG
CGTCCTCGGCCACCCTCCTCCCCAGCGCGGCCTCGCCGTCCTCCTCGACCCGCCGCGCCG
CCGTCGCCTCCGCCGGGCTCCGCCTCCGCCCGTCGCCGTCGCGCTTCTCACAGGCTGCGA
GGAGAGCCCGCGGTGGCGCCGCCGCCGCTGGGGTGGTGCCGCGGCTGCGGGTGGTCCGAT
GCATGGCGGCGTCGGATGCCGCGCAGCTCAAGAGCGCGCGGGAGGACATCAAGGAGATCC
TCAAAACCACCTACTGCCACCCCATCATGGTCCGTTTGGGATGGCATGATTCGGGTACTT
ATGACAAAAATATCGAGGAGTGGCCACAGAGAGGTGGAGCCGACGGAAGCTTAAGATTTG
ATCCTGAGTTGAGTCATGGAGCCAATGCTGGTCTTACTAATGCTTTAAAGCTCATTCAAC
CAATCAAGGACAAATACCCAGGTATCACCTATGCCGATCTGTTCCAGTTGGCGAGTGCGA
CAGCAATTGAGGAAGCCGGTGGCCCAAAACTTCCGATGAAATACGGGAGGGTAGATATCA
CAGCACCCGAGCAGTGTCCACCTGAGGGGAGGCTTCCTGACGCTGGTCCACGCATACCTG
CTGAACACCTTAGGGATGTATTCTATAGGATGGGCCTTGATGACAAGGAAATTGTCGCAT
TGTCCGGCGCACATACACTTGGAAGGTCACGCCCTGACAGGAGTGGCTGGGGAAAGCCAG
AAACAAAATACACAAAGGACGGGCCTGGTGAACCTGGAGGGCAATCATGGACAGCTGAAT
GGTTGAAGTTTGATAACAGCTACTTCAAGGACATAAAAGAGCAAAGGGATCAGGAGCTTC
TAGTATTGCCTACAGATGCTGCACTATTTGATGACCCATCATTCAAGGTATATGCCGAGA
AGTACGCAGAGGACCAGGATGCATTCTTCAAAGACTACGCCGAAGCCCATGCTAAACTGA
GCAACCTTGGTGCAAAGTTTGATCCTCCTGAGGGATTCTCGTTGGACGATGACAAGGGTG
CCGCGGCAACCGACGAGAAGGCGGTTGCTGATCCAGAGCCAACGGTTGTTGCTCCAGAGC
CAATGGTTGCTGCACCAGCCCCAGCGGATGCTACTAATGGCGCAGGACCGCAACCAGAGC
CCTTCGTTGCCGCCAAATACTCTTACAAGAAGAGAGAGTTGTCCGACACGATGAAGCAGA
AGATCAGAGCCGAGTACGAGGGCCTTGGAGGCAGCCCGGATAAGCCTATGCAGTCCAACT
ACTTCCTCAACATTATGATCGTGATCGCAGGATTGGCATTCTTGACGTCTCTGGTCGGCA
ACTAAGATCGGTGGTCTGATGAGTCTCTTCTTTTTCATCTGGTGTAATTAACCATTTTCC
AGGGACTGGTGTGTCGACATGCAAGATGACCAAGGCAATGCTTTTGGTCATCTTACCTTG
TCTTGAGTTTTCATCATTTGAAGTAAAGTGAGGCAAACCTAGTAAATTGCTGGAAACCAT
GGGATGTTTCCTACCTTTTTGTTGTCTTGCTCATCTTACATCATCTCGATTTTTTTGTTG
CACTTGTGTTTT



Homology of Contig TA34617_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g34810.14790.0protein|OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed
Brachypodium v1_2Bradi3g45700.14410.0
Arabidopsis v10AT1G77490.14260.0| Symbols: TAPX | thylakoidal ascorbate peroxidase | chr1:29117688-29120046 FORWARD LENGTH=426