barSeed - Barley Seed Development Database

Probe CUST_9093_PI390587928

Source Contig U35_18898

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9093_PI390587928	Hv_44K_v2	TCACAATGCACCTCTTTTGCACATTTTATTACATCATCAACCTTGGCATGTTAGTCTGAA	813	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.477	1.638	1.446	0.943	0.310	0.280
Raw	776.197	1351.472	1020.559	1084.032	119.759	120.356

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74347.1	1335	2e-24	868 - 927	100	60 / 60	minus	ABC00403
JLOC1	JLOC1_49543.1	1022	8e-25	695 - 754	100	60 / 60	plus
Harvest21	ABC00403	867	3e-25	793 - 852	100	60 / 60	plus	ABC00403
Harvest35	U35_18898	888	3e-25	814 - 873	100	60 / 60	plus

Contig Sequence (888 bp)

>U35_18898 888 Hv_44K_v2
TCGTCTTCTCCCCCCCTCAGCCGCGCCGCTCCTCAGTCTCGTCTCGTCTCGAGTCTGCCG
CCGATCCGTTCGCACCAGCAGCCAGCCGCCCCATCTCCGCTCCGAGACCCTCGATCGACA
AGCGGCGGTGGTGGACATGGGCCAGATCCAGTACTCCGAGAAGTACTTCGACGACACCTT
CGAGTACAGGCACGTGGTCCTCCCGCCGGAAGTCGCCAAGCTCCTCCCCAAGAACCGCCT
GCTCGCCGAGAACGAGTGGCGCGCGCTGGGCGTGCAGCAGAGCCGCGGGTGGGTGCACTA
TGCCGTCCACCGGCCGGAGCCGCACATCATGCTGTTCCGCCGCCCGCTCAACTACCAGCA
GCAGCAGGACGCGGCCGCCGCCGCCGCCGCCCTGATGATGCCCAAGTGATCGCCCCCGGC
GAGGGCAGCGGCGACCGGGGGTTCGACCTCGCGAAAACCCCATGCCCTTTTCATCTCTAA
AAGGGCGGTCGCACACTGGTTTGTTTCGGTCAGGATCTAGTTAATGTTGGTGGTGTCCAC
CATGTGTTCGTCGAAATGCCTGGGGGGAACTTGCAGTGTGTTAGTCTGTGTTGTTATCCT
GGATACTCTGGAATGCTACCTTTTATGTTATGATGATGGTACTGTTTGTAGATCTTCCCA
TGATGATCTATTGCTGTTAGTTCTTGCTTTACTGTTATCTGATTCCTTATGAGTAGGGGT
ATAGCGTAGATGTGATAGTGAATCTTATGTTAGCAAGAGGACATGGAGCATTTGGTTATG
GACGGTCTACCCACTGTCCAAGAATTACCAGACTCACAATGCACCTCTTTTGCACATTTT
ATTACATCATCAACCTTGGCATGTTAGTCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18898 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None