barSeed - Barley Seed Development Database

Probe CUST_907_PI390587928

Source Contig U35_6367

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_907_PI390587928	Hv_44K_v2	ATTACTTTTGTAGCTCACTTCTTTGGATGAGATGTGGCACGTCCAAATCAATTTAATCTC	996	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.849	1.917	1.213	0.881	0.264	0.353
Raw	151.981	257.322	136.626	158.138	16.753	24.070

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_43094.2	1748	8e-25	1600 - 1659	100	60 / 60	plus
JLOC1	JLOC1_43094.1	2115	8e-25	1967 - 2026	100	60 / 60	plus
Harvest21	ABC18844	1056	3e-25	997 - 1056	100	60 / 60	plus	ABC18844
Harvest35	U35_6367	1056	3e-25	997 - 1056	100	60 / 60	plus

Contig Sequence (1056 bp)

>U35_6367 1056 Hv_44K_v2
GAAACATATAGAGGCCCATTTGATGTGATAAATAAGGTTGTCAGGAGTGAAGGCCTCCGG
GGCCTTTACCGAGGTTTTGGAATTACCCTTTTAACTCAATCACCAGCTTCTGCCCTTTGG
TGGAGTTCATATGGTGGTGCTCAACATGCTATCTGGAGGTGTGCCAGCTTTACATAATAA
TTTCCCTTTCCTTTGTGTCTAATGTTTGTACTCGTACATCTTATTTATATTCCTGCAATC
CCTATTTAGGAGCTTGGGCTACGGGATTGATACACAAAAGAAACCTTCCCATTCAGAACT
TATTGCTGTGCAAGCAACAGCTGGAACAATTGCTGGAGCTTGCTCATCGATTATCACTAC
ACCAATAGATACCATCAAGACCCGGCTTCAGGTAATGGACAACTACGGGAGTGGAAGGCC
ATCCGTCATGAAGACTACCAGGCTGCTCCTGCGAGAGGATGGCTGGAGAGGTTTATACCG
AGGGTTTGGACCACGCTTTCTTAACATGTCTCTTTGGGGTACATCAATGATTGTCACGTA
CGAGCTGATAAAGAGACTTTCTGTGAAACCAGAACAATGAGCCTTTTGGCTTCTGCTCTA
CCTAGCTGGTCCTCATTTCCGTTTTGGCCATCTAGTTAATTTCTTTTTGGTACAGGGATT
GAGATGTAACACCGATCTTTAAATTCTCGATGCAAATCCCCTTATAAAGCCTAACATGTT
TCCGTACGGAACTACCGGCATGTAAATACTTCCAAGTGCTGAAGGGTGATCGTTTCCGGA
TGAGAGCCAGAGGATCGATCTGGGTACTGGAGCACCTTGTAGTTGTCGAGCAAAAAATTC
CTTGTAAGTTCTGAAGGGTGCTCGTTTCAGGATGAGAGTCAGAGGCTTGATCTGGGTACT
GGACCACCTTGTAGCTGTTGAGCAAAAAAATTCGGAAAGAGAGTTTTGTGTCTTCCCATC
TAAGTTAACATAGTACTACTAAAGCTTGAATTTTGCATTACTTTTGTAGCTCACTTCTTT
GGATGAGATGTGGCACGTCCAAATCAATTTAATCTC

Homology of Contig U35_6367 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g22600.1	330	3e-80	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi2g12390.2	331	4e-80
Arabidopsis v10	None