barSeed - Barley Seed Development Database

Probe CUST_9064_PI390587928

Source Contig U35_9390

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9064_PI390587928	Hv_44K_v2	GCAGCCTGCGCATCGAGCTCCCGGCCGGCGAGCTCGGCATGGACGACGGCGTGCTGCTCA	667	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18933.2	3981	2e-24	498 - 557	100	60 / 60	plus	ABC24487
MLOC	MLOC_18933.1	1874	2e-24	514 - 573	100	60 / 60	plus	ABC24487
JLOC1	JLOC1_13118.1	1874	8e-25	491 - 550	100	60 / 60	plus
Harvest21	ABC26096	406	3e-25	327 - 386	100	60 / 60	plus
Harvest35	U35_9390	747	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (747 bp)

>U35_9390 747 Hv_44K_v2
TGGTACCGGTCCTGTCAATTCCTCGAGCACTGTTGGCCTACGGCACCCTCGCTCTCCTCG
TGGCCTCCCACGTCCCGCATTCCCCCCCTCCCACCTCTCCCCCCAGATCCGGTCCTCGGA
CGCTCGACGATGGCCGAGGACGCCGCCGCGGGGGCCCGCCGGTGGCGCGGCGAGGAGGGG
CAGCAGCCCCACCGCCTCGCGGCCGCGGCCGGGGCGCCGGAGGACCGCTTCGACGGCCTC
CCCGACCCGCTCCTCCTCCTCATCTTCAACCGCATCGGCGACGTCAAGGCGCTCGGCCGC
TGCGCGCTCGTCTCCCGCCGCTTCCACGCCCTCGTGCCCCTCGTCGACTCCGTCCTCGTC
CGCGTCGACTGCGTCATCCCCGACGACCCCGCCTCCTCCTCCCCGTCCTCCCCCACCGCC
ACCGCCTCCGCCCGCGCGCGCGGCGTCTTCTCCCAGATCGCGCGCATGGTCATCGGCGGC
ATCGTCAAGCCCATCCAGGCCCTCGGCCAGATCCTCTCCCACGCCAACTCCGCCGCCGAC
TTCCCGGCCTCCGCCGCATCCCTCTCCTCCTTCCGCCGCTCCTCCTCGCTCTCCTCCTCG
TCGGCGCCCCACGCCGACGTCTCGCACCACTCCCCCTCCGAGGTGCTCCGCTCCTTCAAG
GAGCTCCGCAGCCTGCGCATCGAGCTCCCGGCCGGCGAGCTCGGCATGGACGACGGCGTG
CTGCTCAAGTGGAAGGCCGACTTCGGC

Homology of Contig U35_9390 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None