barSeed - Barley Seed Development Database

Probe CUST_9060_PI390587928

Source Contig U35_9394

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9060_PI390587928	Hv_44K_v2	ATGGTATCTTCATGCTCGAGTCAGTAGACATTCAGACAGAACACTGTGTTTGGAAGCTCG	703	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.109	1.011	1.324	1.258	0.396	0.364
Raw	115.826	172.777	194.672	293.136	32.159	31.908

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375833	1037	2e-24	750 - 809	100	60 / 60	plus	None
MLOC	MLOC_61037.2	2058	2e-24	1614 - 1673	100	60 / 60	minus	ABC04518 ABC11349
MLOC	MLOC_61037.3	2467	2e-24	2172 - 2231	100	60 / 60	minus	ABC04518 ABC11349
MLOC	MLOC_61039.1	740	2e-24	360 - 419	100	60 / 60	minus	None
MLOC	MLOC_61037.1	2173	2e-24	2027 - 2086	100	60 / 60	minus	ABC04518 ABC11349
JLOC1	JLOC1_39851.2	738	8e-25	244 - 303	100	60 / 60	plus
JLOC1	JLOC1_39851.1	841	8e-25	234 - 293	100	60 / 60	plus
JLOC1	JLOC1_39850.1	2206	8e-25	2024 - 2083	100	60 / 60	minus
Harvest35	U35_9394	809	3e-25	704 - 763	100	60 / 60	plus

Contig Sequence (809 bp)

>U35_9394 809 Hv_44K_v2
CACGCCCTCGCCCAGGCGCTCCGCTCGCTGCTCGCTAGGTGCTCGACCAAATGTCCTCGC
GCCGCCGTGGCTGCCGCTTCCTCGTCCTGCCTCCGCAGCGCCGTTCGGCACGCTTCCTAC
ACCGCCTGCCCCAGGAGCATCCTTCCTACTTCATGCGGCGGGGCCGTATCCGCGGCGCAG
ACGCGCTTCGTGTCGAGTATAGCGGGCCTTGGCCCAGGCGACGAGGGCTCTGGGGAGGAG
GAGGAGTGTGTGGCGGAGTGGGAGGAGGATGAAGACGAAGGGGCCGATGCTGAGATCGGT
GATGGCGGCGACGGCGGCGGTGTCGTCCTGCGGGACGTCAAGTGGGGCGCGCGCGCTCTT
TTGGCGGCCGAGGAGATTCTTGGCGAGCATTTTGGCGATGACATTGCCATGTTCGCCTTC
AAGGTGTCGCCCAAGGGATACGTCTACGTGCGGCTGGACAAGCTCACCAGCAGGTATGGG
TGCCCTGGTATAGAGGAAATAGAGAATTTCAATAGACTCTATAAGCAAAAATTGGATGAG
ATAATCGAAAGAGGCGAAATACCCCTGGACCTGGCTCTTGAGATCTCATCACCAGGAGCA
GAGCGACTTCTGAAGGTGCCGGGTGATCTGGATCGCTTCAAAGATATGGCAATGAGGGTA
CAATACCTTGCTGAAGGTGATGGCCTTGTTTCGGATCAGGTGGATGGTATCTTCATGCTC
GAGTCAGTAGACATTCAGACAGAACACTGTGTTTGGAAGCTCGCGGACGTCAACGAGAAC
CGGGCTGGGAAAGGGAGGCCGTTGAACAG

Homology of Contig U35_9394 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g06090.1	302	8e-95	protein\|expressed protein
Brachypodium v1_2	Bradi1g57350.1	291	1e-102
Arabidopsis v10	AT1G69210.1	305	1e-51	Uncharacterised protein family UPF0090 \| chr1:26018583-26020058 REVERSE LENGTH=305