barSeed - Barley Seed Development Database

Probe CUST_905_PI390587928

Source Contig U35_6369

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_905_PI390587928	Hv_44K_v2	ATGATGTAAAAGTAGTATTGTTCCTCCCCACTAAAGATGGCAACCCCGTCTGCTGCTCAA	965	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.712	1.583	1.136	0.852	0.369	0.321
Raw	695.975	987.368	635.037	758.738	112.294	107.534

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55923.1	2423	2e-24	49 - 108	100	60 / 60	minus	ABC23389
MLOC	MLOC_55924.1	1067	7e-23	1011 - 1067	100	57 / 57	plus	ABC23389
JLOC1	JLOC1_36114.1	2208	8e-25	1841 - 1900	100	60 / 60	plus
Harvest35	U35_6369	1059	3e-25	966 - 1025	100	60 / 60	plus

Contig Sequence (1059 bp)

>U35_6369 1059 Hv_44K_v2
GTCAACCCCCTCGTGCCCTAACAGTAACAGCGGCCGCCGTGCCGCACCTCAGCGTCGCCG
CCGACGACGCGCTCCCGCCCCCGCCCCCGCCCCCGTACCCTTCCCCAGCGCTTACGCCTC
CCGCCCGTCACGCGCTTCGTCCCCGTCGCCGCGATACCCCGCTGACGTTCGCGATTTCGG
GGTGCCGCCTGGATCCGCCCCTGGCCGATGGAGTGCGTGGTGCAGGGTATCATCGAGACC
CAGCATGTTGAAGCTCTGGAGGTTCTTCTACAAGGCCTCTCTGGTGTCCCAAAGGAACGT
GTGAGGGTGCATGAGCTCTGTCTTAAAAGTGTGCCAATGCTAGGAGCTGTCCCATCAGAG
GTTCGTTTGTTGTGTGATTTAGCTCAGCCTACACCATCCTGGACCATAAGGCATGTTGGT
GGCGCCATGAGAGGTGCCGGTGCAGAGCAAATCTCAATTCTCGTGCGTACAATCGTCGAA
AGCAAAGCCAGCAGCAATGTGTTGCGTTACTTCTATGGCATCGGCTACAAGTTAGATCAT
GAAATTTTGAAGGTTGGCTTTGCATTTCGCTTCCAGCGAGGTGCCCAGTTCACCGTGACT
GTGACTTCTGCCAACAAGATGCCAAAGCTCCATGCAACCGATGAAGCTGTGCAGGTCACT
CCTGGAATACAGCTGGTGGAGATCACAGCTCCAGCCGCTGCTAACAATTACAATGATGTT
GTTTCAGCTGTCACCTCGTTCTGTGAATATCTGGCGCCGCTGCTGCATCTCTCCAAACCA
GGTAACTCAACTGGAATCGTCCCTACCGCTGGCGCTGCCGCTGCCTCGCTCATGTCAAGT
GGTGGTGCGAAAACATTGTAATCTTTGTCATATGTAATCCCTTGGGCGGCATGCTGTTCT
GTACTTCTAGTCAGTTGATTACAAATTTACAATGCATGAATAGCACTATGATACCTTGGA
ATGGTATGATGTAAAAGTAGTATTGTTCCTCCCCACTAAAGATGGCAACCCCGTCTGCTG
CTCAAATCGGAAACGAGTGGTGATGTGAAAAAAAAAAAA

Homology of Contig U35_6369 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10050.1	221	2e-123	protein\|expressed protein
Brachypodium v1_2	Bradi3g06860.1	218	5e-131
Arabidopsis v10	AT2G22370.1	219	2e-103	unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr2:9501019-9502078 REVERSE LENGTH=219