barSeed - Barley Seed Development Database

Probe CUST_9058_PI390587928

Source Contig U35_9397

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9058_PI390587928	Hv_44K_v2	GCCTTGAACCTTCATATTTTCTTTGCTGTTGAGTAGTCTGTGAACCTTTTATGTTACTGT	1213	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.029	3.069	1.133	0.648	0.337	0.290
Raw	64.874	99.647	33.167	31.529	3.940	3.099

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2492.1	1777	2e-24	27 - 86	100	60 / 60	minus	ABC20893
MLOC	MLOC_2492.2	1565	2e-24	23 - 82	100	60 / 60	minus	ABC20893
JLOC1	JLOC1_1490.1	1654	8e-25	1583 - 1642	100	60 / 60	plus
Harvest21	ABC20893	1301	3e-25	1214 - 1273	100	60 / 60	plus	ABC20893
Harvest35	U35_9397	1301	3e-25	1214 - 1273	100	60 / 60	plus

Contig Sequence (1301 bp)

>U35_9397 1301 Hv_44K_v2
GGTTGGTTCTTTTATCACCTTCAATATTTGATGGATTTTCTTGTGATGTGCTGCGAAAAG
ATACGAATGCTTGGAGTAGCTCAAGCTGAGTATATCATCGAAACATTTGAATTGGAAGAA
ACTGAAGCTGAATATGGTCTTGATCGAGAGAGCCTGGGAACGCCTTGTGATACTCCTCGA
GGATCTCGCTATGAAAATGTGATGCATGTTATCTCTTTATATCCTGCAATTTGGGAAATT
CTCTGTATGATTGGGGATGAGCACAGTGGCATAAAATCACTACGAGCTCAACAGGTGTCT
TATGCATTCGAGACATTTGAGTTTGTCTTTATAGCACACTTGCTGCAAACCATATTTGAG
TATACGGATGACTTATGCAGTGCTTTACAAAAGAGGGATCAAGATATTGTTAATGCCATC
GATCTTGTTAGCGTGACAAAGAAACGGTTGCAGTTACTGCAGGAAGATGGTGAATGGGAA
AGGTTTCTTCAGAAGGTCACCTCTTTTTGTGTGAAACATGACATCGAACTTGTGGACATG
CATGGTTTGTATGACCCGGTCGGGAGATCTCCAAAGTTCTACGAAAAGGCCACGAATCTT
CATTACTACCACGTTGATATGTTTTTGGATGTCATTGGTAGTCAACTTCGAGAACTTGAT
GGCATGTTTGATGAGGTCAACACGGAGTTACTGATTTGCATGGCAGCATTCAATCCCGTC
AACTCATTTGCTGCTTATGATGAGGAAAAGCTGGTTAAGCTTGCCAACTTTTATCCCGAG
GATTTTTCACAGTGTGAGTTGTTGCATCTTCCCTTCCAACTTTCAAACTTCGTTGATGAT
CTGCGTCTAGACGAAAGGTTTAGAGAAGTGAAGACTCTTGCGGAGCTTTCTATCAAGCTT
GTTGAAACAAGGAAGGACCGTGTTTACAACATTGTCTACAGGCTTCTCAGGTTGGCGCTA
ATCCTTCCTGTAGGGACCGCCAGTGATGAGAGGGACCTATCTTCAGTGAATTACGTGAAC
AATAAGGCGGAGAACAAGCTGTCGGAGCAATGCGCGAATGATTGCTTGGTTACATGTCTT
GAGCGAGAAACCTTTGGGCAAGTGAAGGACGATGCCATCATATCTCGCTTCCGAGCTGTG
AATAACCGCTAGGACGTGTTGCGATTTTTATCTACTACGTAGTTTGAATTCTCTGTATCA
GTTGAACGAACTAGCCTTGAACCTTCATATTTTCTTTGCTGTTGAGTAGTCTGTGAACCT
TTTATGTTACTGTNAACAAGCCTGTCAATCTTCATGGTGCA

Homology of Contig U35_9397 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11830.1	880	3e-127	protein\|hAT dimerisation domain-containing protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	AT1G19260.1	769	8e-75	TTF-type zinc finger protein with HAT dimerisation domain \| chr1:6657260-6659569 REVERSE LENGTH=769