- Probe CUST_9054_PI390587928
- Source Contig U35_14401
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9054_PI390587928 | Hv_44K_v2 | ACATGATCTAGGTCCAATGAGCCTAGGATTGTCCCACAGCTTGTCTAGGTATAAGCTGAA | 477 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.198 | 1.043 | 1.188 | 0.795 | 0.284 | 0.291 |
| Raw | 1380.267 | 1688.882 | 1847.270 | 1995.481 | 245.581 | 276.971 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_44617.1 | 2029 | 2e-24 | 502 - 561 | 100 | 60 / 60 | plus | ABC03819 ABC03821 |
| MLOC | MLOC_44617.2 | 1944 | 2e-24 | 520 - 579 | 100 | 60 / 60 | plus | ABC03819 ABC03821 |
| JLOC1 | JLOC1_28927.4 | 2154 | 8e-25 | 401 - 460 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28927.3 | 2159 | 8e-25 | 406 - 465 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28927.2 | 2173 | 8e-25 | 420 - 479 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28927.1 | 2196 | 8e-25 | 443 - 502 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32186 | 622 | 3e-25 | 503 - 562 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03819 | 2186 | 3e-25 | 496 - 555 | 100 | 60 / 60 | plus | ABC03819 |
| Harvest35 | U35_14401 | 543 | 3e-25 | 478 - 537 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14397 | 2191 | 3e-25 | 501 - 560 | 100 | 60 / 60 | plus |
Contig Sequence (543 bp)
>U35_14401 543 Hv_44K_v2 GCGCCTCCTTTCCTCCCTTCCCCTCCTCCCCCTCGCCGCCGCCGCCGCCGCCGCCAGCGA CTCCTCCGATACAGGTCAGGAGGAGGAGATGTTGGTGCTCTTCGAGACGCCCGCGGGGTT CGCCCTCTTCAAGGTGCTGGACGAGGGGAAGCTCAGCAGCGTCGAGGATCTGTGGAAGGA CTTCGCGTCGTCGGACAAAGCAAGAAAGGTGGTTGAGCTGAAGGCTTTCAACAAGTTTGA AAATACCTCCGATGCTCTTTCAGCTGCAACTTTGCTAATTGATAGCAAGCCCAGCAAAGG TCTGCGCAAGTTCCTGCAGAAGCACTGTGATGGTGAAACATTGGCTGTTGCCGATTCTAA ACTTGGGAATGCTATCAAAGAAAAGCTGAAAATTGATTGCCTTCACAACAGTGCTGTCAT GGAGCTGATGAGAGGGCTGAGGAACCAGCTTACTGAACTTATGTCTGGACTAGCTGAACA TGATCTAGGTCCAATGAGCCTAGGATTGTCCCACAGCTTGTCTAGGTATAAGCTGAAGTT CAG
Homology of Contig U35_14401 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g22740.1 | 569 | 1e-88 | protein|nucleolar protein NOP5-1, putative, expressed |
| Brachypodium v1_2 | Bradi1g18440.2 | 443 | 1e-95 | |
| Arabidopsis v10 | AT3G05060.1 | 533 | 9e-69 | NOP56-like pre RNA processing ribonucleoprotein | chr3:1413174-1415564 REVERSE LENGTH=533 |