barSeed - Barley Seed Development Database

Probe CUST_9053_PI390587928

Source Contig U35_14402

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9053_PI390587928	Hv_44K_v2	AAGTTGATGGGCAATAGGACTAACGCGGTTAACCTTGATTTCTCGGAGATACTGACAGAT	725	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249392.1	2046	2e-24	803 - 862	100	60 / 60	plus	ABC03819 ABC10418
MLOC	MLOC_13273.2	888	2e-24	151 - 210	100	60 / 60	plus	ABC03819 ABC10418
MLOC	MLOC_13273.1	1585	2e-24	340 - 399	100	60 / 60	plus	ABC03819 ABC10418
JLOC1	JLOC1_8963.1	1596	8e-25	426 - 485	100	60 / 60	plus
Harvest21	ABC03818	793	3e-25	726 - 785	100	60 / 60	plus
Harvest35	U35_14402	793	3e-25	726 - 785	100	60 / 60	plus

Contig Sequence (793 bp)

>U35_14402 793 Hv_44K_v2
TTCCCCATCCCACTCGCCGCAGCCAAGCTCCCTCCTGGGCTCCTCCTAGCTCGCGGTCTC
CATCGCCCAATCAGCTCAAGGTGAGTTGAGTTGCGGCTAGGTTGGAGATGTTGGTGCTGT
TCGAGACGCCCGCTGGGTTCGCCCTTTTCAAGGTTCTGAACGAGAGCAAGCTTGACAAGG
TCGAGGATCTATGGAAGGAGTTCACGACGTCGAACTCGGCGAGAAAGGTGGTTGAGTTGA
AAGCTTTCAACAAGTTTGAGAACACATCTGATGCCCTTTCTGCTGCAACCCTCATTATTG
ATAGCAAACCTACCAAGGGTTTGCGCAAGTTCTTGCAGAAGCATTGCGACGGTGAAACGT
TAGCTGTTGCTGACTCTAAACTTGGAAATGCTATAAAAGAGAAACTGAAAATTGACTGCG
TTCACAACAGTGCTGTGATGGAGCTGATGAGAGGGCTGAGAAATCAGCTTAGTGAGCTTA
TATCTGGGTTGGGCACACAGGACCTTGGTCCAATGAGCCTGGGATTGTCCCACAGCTTGT
CTAGATATAAGCTGAAGTTCAGTCCTGAAAAGGTTGATACCATGATCATTCAGGCCATTG
GCTTATTGGATGATCTTGACAAGGAGCTTAACACATATGCAATGAGAGTTCGTGAATGGT
ATGGTTGGCACTTCCCAGAGCTCACTAAGATAGTGACAGATAATATACAGTATGCAAAAG
TTGTGAAGTTGATGGGCAATAGGACTAACGCGGTTAACCTTGATTTCTCGGAGATACTGA
CAGATGACGAGGT

Homology of Contig U35_14402 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22740.1	569	3e-147	protein\|nucleolar protein NOP5-1, putative, expressed
Brachypodium v1_2	Bradi1g62430.3	528	2e-152
Arabidopsis v10	AT5G27120.1	533	3e-117	NOP56-like pre RNA processing ribonucleoprotein \| chr5:9541287-9543684 FORWARD LENGTH=533