- Probe CUST_9049_PI390587928
- Source Contig U35_14406
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9049_PI390587928 | Hv_44K_v2 | GTGTGTGTGTGTCGCAGTGTCAGTTCCACCTATGATCGGTATCCTATCCGGTTCGTGTTT | 725 | GeneList: grey60 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.671 | 4.060 | 1.303 | 0.740 | 0.209 | 0.241 |
| Raw | 102529.533 | 140501.033 | 40599.367 | 37141.327 | 3575.413 | 4575.363 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355655 | 877 | 2e-24 | 815 - 874 | 100 | 60 / 60 | plus | ABC00407 ABC00558 ABC00982 |
| MLOC | MLOC_9799.1 | 1323 | 2e-24 | 487 - 546 | 100 | 60 / 60 | plus | ABC00407 ABC00558 ABC00982 |
| JLOC1 | JLOC1_6356.3 | 1263 | 8e-25 | 331 - 390 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6356.2 | 1284 | 8e-25 | 352 - 411 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6356.1 | 1288 | 8e-25 | 356 - 415 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29458 | 180 | 3e-25 | 36 - 95 | 100 | 60 / 60 | minus | ABC29458 |
| Harvest21 | ABC00573 | 1065 | 3e-25 | 987 - 1046 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00407 | 746 | 3e-25 | 399 - 458 | 100 | 60 / 60 | plus | ABC00407 |
| Harvest21 | ABC00057 | 1083 | 3e-25 | 1003 - 1062 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00558 | 382 | 1e-24 | 299 - 357 | 100 | 59 / 59 | plus | ABC00558 |
| Harvest21 | ABC29456 | 218 | 1e-23 | 63 - 122 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_14407 | 1042 | 3e-25 | 818 - 877 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14406 | 810 | 3e-25 | 726 - 785 | 100 | 60 / 60 | plus |
Contig Sequence (810 bp)
>U35_14406 810 Hv_44K_v2 TCTCATCGGATCAGCCACAGGCACACAACAGGGTCACAGTAGCACTAGCTTCAGCTAGCT CCGGGCATTTTCTTGCTTCCACCACGGCAATGGCCACCGCTGATGTCCAGAACCCGACGG CCGCGCTGACGGAGGAGGCGCCGGCGGTGGAGACGCCCGTGGCCGCCGAGGAGGCCGCGA AGACGGAGGAGGTCCCCGCGCCGGCGGAGGCCGAGGTCGAGGCGCCTGCCCCCGTCGAGG TCGAGGCGGCCAAGGAGGAGGCGCCGGCCGCCGCCGTGACGGAGGAGGCCAAGGAGCCCG AGCCAGCAGCTGCGGCCGAGCCGGTGGCCGAGGCGCCAGCCGTGGTCGAGACGGAGACCA AGGAGGCCGTGGCAGAGGCCGTCGCCGAGGAAGCGCCGGCTGCAGCGGAGGATGCGCCCG CGGCCGCGGCAGAGGAGGCCACCGTGAGCGTGTGAGGCGCGCGTCCACGGCGGCGGCGGC CGTGTGCTCCTACGTGGCACGGCGCGATGCTCAGTCAGCCAGTGGAGTGGAGTGGGGTGC TACCTTTTTACTACGAGTACGTACTAGGTGTGGGGTGCTTTGCGCGGGGTCGCGCGTGAC GTGGGCTAAATAAAAGTGTTGTCGGGTCGAGGCCCAGTGCCCAGTCAGCAGCCAGCGAGC GACGCGGTGCCACTCTCGCCGGCCACCGTGCCTGCGTCTGCTCAGCTGGAGCTTGTTGTT GTGGTGTGTGTGTGTGTCGCAGTGTCAGTTCCACCTATGATCGGTATCCTATCCGGTTCG TGTTTAAAAAAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_14406 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |