barSeed - Barley Seed Development Database

Probe CUST_9048_PI390587928

Source Contig U35_14407

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9048_PI390587928	Hv_44K_v2	ATACTATGTCTCTGGGTGATGTTGAGATAATTTAATAAAAATCCGGCGATCGCCGGCGCC	915	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.858	4.586	1.504	0.750	0.170	0.243
Raw	1047.949	2039.462	577.788	473.659	35.280	57.006

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9799.1	1323	3e-21	574 - 633	97	58 / 60	plus	ABC00407 ABC00558 ABC00982
JLOC1	JLOC1_6356.3	1263	2e-21	418 - 477	97	58 / 60	plus
JLOC1	JLOC1_6356.2	1284	2e-21	439 - 498	97	58 / 60	plus
JLOC1	JLOC1_6356.1	1288	2e-21	443 - 502	97	58 / 60	plus
Harvest35	U35_14407	1042	3e-25	916 - 975	100	60 / 60	plus

Contig Sequence (1042 bp)

>U35_14407 1042 Hv_44K_v2
ACCCACGCCTCACACTCTCTCATCGGATCAGCCACAGGCACACAACAGGGTCACAGTAGC
ACTAGCTTCAGCTAGCTCCGGGCATTTTCTTGCTTCCACCACGGCAATGGCCACCGCTGA
TGTCCAGAACCCGACGGCCGCGCTGACGGAGGAGGCGCCGGCGGTGGAGACGCCCGTGGC
CGCCGAGGAGGCCGCGAAGACGGAGGAGGTCCCCGCGCCGGCGGAGGCCGAGGTCGAGGC
GCCTGCCCCCGTCGAGGTCGAGGCGGCCAAGGAGGAGGCGCCGGCCGCCGCCGTGACGGA
GGAGGCCAAGGAGCCCGAGCCAGCAGCTGCGGCCGAGCCGGTGGCCGAGGCGCCAGCCGT
GGTCGAGACGGAGACCAAGGAGGCCGTGGCAGAGGCCGAGCCGGCGGCGGCGGCCGAGGA
GGTGAAGGAGGAGGAGGCGGCACCCGCTGCCGCCGAGCCGGAGGTGGCGGCCGTCGCCGA
GGAAGCGCCGGCTGCAGCGGAGGATGCGCCCGCGGCCGCGGCAGAGGAGGCCACCGTGAG
CGTGTGAGGCGCGCGTCCACGGCGGCGGCGGCCGTGTGCTCCTACGTGGCACGGCGCGAT
GCTCAGTCAGCCAGTGGAGTGGAGTGGGGTGCTACCTTTTTACTACGAGTACGTACTAGG
TGTGGGGTGCTTTGCGCGGGGTCGCGCGTGACGTGGGCTAAATAAAAGTGTTGTCGGGTC
GAGGCCCAGTGCCCAGTCAGCAGCCAGCGAGCGACGCGGTGCCACTCTCGCCGGCCACCG
TGCCTGCGTCTGCTCAGCTGGAGCTTGTTGTTGTGGTGTGTGTGTGTGTCGCAGTGTCAG
TTCCACCTATGATCGGTATCCTATCCGGTTCGTGTTTAAAAAAAAAAAAAAAAAAAAAAG
CTTCCTGCTTTGATTATACTATGTCTCTGGGTGATGTTGAGATAATTTAATAAAAATCCG
GCGATCGCCGGCGCCCGTAGGTCCTTGTTCGGCGTGAAACATAGATGCGCTGCATTATTC
GTGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14407 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None