barSeed - Barley Seed Development Database

Probe CUST_9046_PI390587928

Source Contig U35_14409

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9046_PI390587928	Hv_44K_v2	GGCTCAGCCATTTGGTTCTGTTATTATGACTGTTGCTACCAACATGGTATCTTGTTTTTT	1601	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364279	1552	2e-24	1461 - 1520	100	60 / 60	plus	ABC00982 ABC35500
MLOC	MLOC_14193.1	1623	2e-24	81 - 140	100	60 / 60	minus	ABC00982 ABC35500
JLOC1	JLOC1_9681.4	1672	8e-25	1456 - 1515	100	60 / 60	plus
JLOC1	JLOC1_9681.3	1553	8e-25	1337 - 1396	100	60 / 60	plus
Harvest21	ABC00982	1675	3e-25	1602 - 1661	100	60 / 60	plus	ABC00982
Harvest21	ABC27421	474	8e-21	16 - 78	95	60 / 63	minus
Harvest35	U35_14409	1725	3e-25	1602 - 1661	100	60 / 60	plus

Contig Sequence (1725 bp)

>U35_14409 1725 Hv_44K_v2
GGNAACTGNACACTGCGNACACACACACACACCACATCAACAAGCTCCAGCTGAGCAGAC
GCAGGCACGGTGGCCGGCGAGAGTGGCACCGCGTCGCTCGCTGGCTGCTGACTGGGCACT
GGGCCTCGACCCGACAACACTTTTATTTAGCCCACGTCACCTAAAACCCAAATCCGGCCC
CGACCGACGACGCGAGTCAAAGAGCAGCGGCGACCGCGCACATCACCACCACCACCCGCC
TGACGGAGCCCTTCCTTCCCATCGGCGGCGGAGATGGTGGGGTGGCTCAAGGCGCTGGTG
TACGGCGCGGGGGGCATGGCGGTGGTGGGTCTGGCGGCGCTGGTGGCGCTGCAGGAGCGC
CTCGTCTACGTGCCCGTGCTCCCTGGTCTCCCGCGAGCCTACCCCATCACGCCCACGCGC
CTCCGACTCATCTATGAGGACGTCTGGCTCCGCGCCGCCGACGGCGTGCGCCTCCACTCC
TGGTTCCTCCGCCATTCTCCCACCTGCCGAGGTCCAACCATTCTGTTCTTCCAGGAAAAT
GCCGGCAATATTGCACATCGTTTGGAATGCGTTCGACTAATGATGCAGCGGCTACAGTGC
AATGTGTTTATGCTTTCTTATAGAGGGTATGGTGAGAGTGAAGGTTATCCTTCTCAGAGT
GGCATCACAAAAGATGCACAGGCTGCGCTTGATCATCTACTTCAGAGGGAGGACATTGAC
ACATCCAGGATAGTTATCTTTGGGAGATCTTTAGGAGGTGCTGTTGGATCAGTTCTTGCA
AAGAACAATCCTGACAAGGTGTCTGCTCTAATATTGGAAAATACTTTTACATCTATATTG
GATATGGCTGGTATCATGCTGCCCTTCTTAAGATGGTTCATAGGCGGCAGTTCTGCCAAA
GGCCCAAAACTTCTTAACTGTGTTGTTCGCTCTCCATGGAGTACACTTGATGTTGTTGCA
GAGGTCAAACAACCCATTCTCTTCCTTTCTGGATTGCAAGATGAACTGGTTCCCCCTTCA
CACATGAGGATGCTGTATGACAAAGCTGTTGAACATAACAGGAATTGTAGGTTTGTTGAT
TTTCCCAGTGGTATGCATATGGATACCTGGATTTCTGGAGGGGACCGCTACTGGAGGACA
ATTGAATTGTTTCTGGACCAATATGCCCCAGAAGTAGAGAGTTCTGATGTCAGCTGCACA
AGTGAAATTGCTGATGATGATAAAGCTGCATAATAATTGGGATATTTAGAGCAGCCTGCT
GTTTTCCACCAGTTTTTCTGATGTTGATGCAATTCCGGTCTTTGATGGATTGAAGATCAT
TTCAAACAATTAATTCAGGTGATTGTTCTGCTCCATTCCACCTGAAGAAGCCAAAGCTGT
GAATATATTTTGAGGTTGTTCTCCATCCTATGATGCTGCTGCATTTGTGTATGGAGTGAC
ATATATATATTTCTGAGCCTAGCATGGCCTTCAACTCCCGAGTTTCTGTACAATGTTGAA
TTGGCTTCATTCAAGTATTTGCAATTTATTGGAACTAGTAGTACCGTATGTTAGCAAATC
TAGCCTTGGTGTATGACGGTTCAGTATAGGGTAATCTTGTTGGCTCAGCCATTTGGTTCT
GTTATTATGACTGTTGCTACCAACATGGTATCTTGTTTTTTTGCGCCTGCTGTGCAAAAA
CCTGCAGCTTTCAATATCTTTGTTTCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14409 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g41730.1	321	0.0	protein\|OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed
Brachypodium v1_2	Bradi1g21755.1	321	0.0
Arabidopsis v10	AT5G20520.1	308	1e-155	\| Symbols: WAV2 \| alpha/beta-Hydrolases superfamily protein \| chr5:6943536-6946315 REVERSE LENGTH=308