- Probe CUST_9034_PI390587928
- Source Contig U35_14422
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9034_PI390587928 | Hv_44K_v2 | TGTGGCCGGTACTATTGCAACTTGGAAATAATAAACCTCTGTTTCTGAATAAAGCTTTTG | 648 | GeneList: plum1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.013 | 0.010 | 0.479 | 1.372 | 1.634 | 1.678 |
| Raw | 202.158 | 108.089 | 19247.637 | 76828.667 | 34486.367 | 38976.633 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_28157.1 | 1316 | 2e-24 | 270 - 329 | 100 | 60 / 60 | minus | ABC01458 ABC01460 ABC01461 ABC01466 ABC01469 ABC01470 ABC32264 ABC34367 |
| Harvest21 | ABC34367 | 642 | 3e-25 | 559 - 618 | 100 | 60 / 60 | plus | ABC34367 |
| Harvest21 | ABC32630 | 641 | 3e-25 | 25 - 84 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC01460 | 760 | 3e-25 | 649 - 708 | 100 | 60 / 60 | plus | ABC01460 |
| Harvest21 | ABC01466 | 615 | 1e-23 | 537 - 596 | 98 | 59 / 60 | plus | ABC01466 |
| Harvest21 | ABC32264 | 589 | 2e-21 | 15 - 67 | 100 | 53 / 53 | minus | ABC32264 |
| Harvest35 | U35_38407 | 642 | 3e-25 | 559 - 618 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37037 | 641 | 3e-25 | 25 - 84 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14422 | 760 | 3e-25 | 649 - 708 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36852 | 589 | 2e-21 | 15 - 67 | 100 | 53 / 53 | minus | |
| Harvest35 | U35_14426 | 603 | 2e-21 | 537 - 589 | 100 | 53 / 53 | plus |
Contig Sequence (760 bp)
>U35_14422 760 Hv_44K_v2 GCGCACAAACATAAGCATCAAAGCAAACTTGTAGCCAGCCACCATGAAGACCATGTTCAT CCTCGCGCTCATCGTCTTCGCGGCGACCAGCACCGTTGCACAGCTGGACACTACCTGTAG CCAGGGCTATGGGCAGTGCCAGCAACAGCCGCAACAGCAGATGAACACATGTGCTGCTTT CCTGCAGCAGTGCAGCCAGACACCATACGTCCAGTCACAGATGTGGCAGGCAAGCGGTTG CCAGTTGATGCGGCAACAATGCTGCCAGCCACTGGCCCAGATCTCGGAGCAGGCTCGGTG CCAGGCCGTCTGTAGCGTGGCACAGGTCATCATGCGGCAACAGCAAGGGCAGAGTTTCAG TCAGCCTCAGCAGCAGCAATCGCAAAGTTTCGGCCAGCCTCAGCAGCAGGTTCCGGTTGA GATAATAAGGATGGTGCTTCAGACCCTTCCGTCGATGTGCAGCGTGAACATTCCGCAATA TTGCACCACCACCCCGTGCACCACCATCACCCCCACCATCTACAGCATCCCCATGGCAGC TACCTGTGCCGGTGGTGTCTGCTAAGATCTGTGATGTGCTAGCTAGATCGATCACCGTTT AGTTGATCGATGAAGAGCTACAAAATAAAAGTGCCATACGTCATCATGTGTGGCCGGTAC TATTGCAACTTGGAAATAATAAACCTCTGTTTCTGAATAAAGCTTTTGATAAAAAAAAAA AAAAAAATTCTGTTTTGCATGATAAAAAAAAAAAAAAAAA
Homology of Contig U35_14422 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |