- Probe CUST_9032_PI390587928
- Source Contig U35_14424
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9032_PI390587928 | Hv_44K_v2 | GTGTGGCCAGTACTGTTGCAAGTGCAACATAGAAATAAGAAACCTTTGTTTCTGAAAAAA | 657 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.043 | 0.036 | 0.191 | 4.247 | 17.724 | 31.931 |
| Raw | 2.561 | 2.934 | 32.767 | 1117.368 | 1575.400 | 3144.770 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_35423.1 | 828 | 3e-21 | 720 - 779 | 97 | 58 / 60 | plus | ABC01458 ABC01460 ABC01461 ABC01464 ABC01466 ABC01470 ABC32264 ABC34367 |
| MLOC | MLOC_32822.1 | 915 | 3e-21 | 667 - 726 | 97 | 58 / 60 | plus | ABC01458 ABC01460 ABC01461 ABC01464 ABC01466 ABC01470 ABC32264 ABC34367 |
| MLOC | MLOC_24844.1 | 1226 | 3e-21 | 342 - 401 | 97 | 58 / 60 | minus | ABC01460 ABC01461 ABC01464 ABC01470 |
| JLOC1 | JLOC1_22865.1 | 824 | 2e-21 | 716 - 775 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_21353.1 | 769 | 2e-21 | 654 - 713 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_17059.1 | 1169 | 2e-21 | 287 - 346 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC01461 | 723 | 3e-25 | 653 - 712 | 100 | 60 / 60 | plus | ABC01461 |
| Harvest21 | ABC01470 | 718 | 6e-22 | 645 - 705 | 97 | 59 / 61 | plus | ABC01470 |
| Harvest21 | ABC01464 | 748 | 6e-22 | 658 - 717 | 97 | 58 / 60 | plus | ABC01464 |
| Harvest35 | U35_14424 | 759 | 3e-25 | 658 - 717 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14429 | 718 | 6e-22 | 645 - 705 | 97 | 59 / 61 | plus |
Contig Sequence (759 bp)
>U35_14424 759 Hv_44K_v2 ACAAACATAAACATTGAAGCGCGAGCTTGTAGCTCCCGCAAAAAAAGAAGAAGAAGCAAG AGCTAAGCACCATGAAGACCATGTTCATCGTCGCTCTCATCGCCCTCGCGGTGATCAGCT CTGTTGCGCAACTGGACACTACCTGCATCCAGGGCTATGGGCAATGCCAGCAGCAACCGC AGCACATGAACACATGCGCTGCTTTCCTACAACAGTGCAGCCCGACGCCATATGTACAGT CACAGATGTGGCAAGCAAGCGGTTGCCAGTTGATGCGACAACAGTGCTGCCAGCCGCTGG CCCAGATCTCAGAGCAGAATAGGTGCCAGGCCGTCTGTAGCGTGGCACAGGTCATCATGC AGAAGCAGCAACAGCAGCAAGGGCAAAGTTTCGTCCAGCCTCAGCAACAAGTTCCGGTTG AGATAACCAGGATGGTGCTTCAGACCCTTCCGTCGATGTGCAGGGTGAACATCCCGCAAC ATTGCGTCGACACCCCATGCAGCACCATCACTCAGAGCCCCTACAACATCCCTATGGCCG CTACCTGTGTTGGTGGTACTTGCTAAGATCTATGCTGCGCTAGCTAGATCGATCATCATT TAGTTTAGATGATGGATGAAGGGTGAAAAATAAAATAAAAGTGCTATACATCATCATGTG TGGCCAGTACTGTTGCAAGTGCAACATAGAAATAAGAAACCTTTGTTTCTGAAAAAAAAA AAAAAAAAGCTTTTGTCTGAACAAAAAAAAAAAAAAAAA
Homology of Contig U35_14424 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |