- Probe CUST_9031_PI390587928
- Source Contig U35_14425
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9031_PI390587928 | Hv_44K_v2 | CATCATGTGTGGCCGGTACTATTGCAACTTGGAAATAATAAACCTCTGTTTCTGAAAAAA | 774 | GeneList: plum1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.013 | 0.010 | 0.474 | 1.446 | 1.632 | 1.654 |
| Raw | 251.334 | 142.135 | 23123.413 | 98521.967 | 42112.367 | 46829.700 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_28157.1 | 1316 | 7e-23 | 277 - 336 | 98 | 59 / 60 | minus | ABC01458 ABC01460 ABC01461 ABC01466 ABC01469 ABC01470 ABC32264 ABC34367 |
| Harvest21 | ABC01458 | 711 | 3e-25 | 639 - 698 | 100 | 60 / 60 | plus | ABC01458 |
| Harvest21 | ABC34367 | 642 | 1e-23 | 552 - 611 | 98 | 59 / 60 | plus | ABC34367 |
| Harvest21 | ABC32630 | 641 | 1e-23 | 32 - 91 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC32264 | 589 | 1e-23 | 14 - 74 | 98 | 60 / 61 | minus | ABC32264 |
| Harvest21 | ABC01460 | 760 | 1e-23 | 642 - 701 | 98 | 59 / 60 | plus | ABC01460 |
| Harvest21 | ABC01466 | 615 | 6e-22 | 530 - 589 | 97 | 58 / 60 | plus | ABC01466 |
| Harvest35 | U35_14425 | 847 | 3e-25 | 775 - 834 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38407 | 642 | 1e-23 | 552 - 611 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_37037 | 641 | 1e-23 | 32 - 91 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_36852 | 589 | 1e-23 | 14 - 74 | 98 | 60 / 61 | minus | |
| Harvest35 | U35_14426 | 603 | 1e-23 | 530 - 590 | 98 | 60 / 61 | plus | |
| Harvest35 | U35_14422 | 760 | 1e-23 | 642 - 701 | 98 | 59 / 60 | plus |
Contig Sequence (847 bp)
>U35_14425 847 Hv_44K_v2 ACAAGTGTGTCAGATGATCAGTTGGGAAAGCACACAAAACCTTTAGCATAGGAACCTACA GATGCAATGCACCAAATGATGCCATGGTAGCTATAAATAGGCCCGCACCATGAAGATCCT CCCTCATCACCCTTCACACAAACACAAGCATCAAAGCAAACTTGTAGCCAGCCACCATGA AGACCATGCTGATCCTCGCGCTCATCGCCTTCGCGGCGACCAGCGCCGTTGCACAGCTGG ACACTACCTGTAGCCAGGGCTACGGACAGTGCCAGCAACAGCCGCAGCAACAGATGAACA CATGTGCTGCCTTCCTGCAGCAGTGCAGCCGGACACCATACGTCCAGTCACAGATGTGGC AGGCAAGCGGTTGCCAGTTGATGCGGCAACAATGCTGCCAGCCGCTGGCCCATATCTCGG AGCAGGCTCGGTGCCAGGCCGTCTGTAGCATGGCACAGGTCATCATGCGGCAACAGCAAG GGCAGAGTTTCACTCAGCCTCAGCAGCAGCAATCGCAAAGTTTCGGCCAGCCTCAGCAGC AGGTTCCGGTTGAGGTAATGAGGATGGTGCTTCAGACCCTTCCGTCGATGTGCAGCGTGA ACATCCCGCAATATTGCACCACCACCCCGTGCAGCACCATCACCCCCACCATCTACAGCA TCCCCATGGCAGCTACCTGTGCCGGTGGTGTCTGCTAAGATCTGTAATGTGCTAGCTAGA TCGATCACCGTTTAGTTGATCGATGAAGAGCTACAAAATAAAAGTGCCATACGTCATCAT GTGTGGCCGGTACTATTGCAACTTGGAAATAATAAACCTCTGTTTCTGAAAAAAAAAAAA AAAAAAA
Homology of Contig U35_14425 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |