- Probe CUST_9029_PI390587928
- Source Contig U35_14427
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9029_PI390587928 | Hv_44K_v2 | TGCTAAGATCTATGCTGCACTAGCTAGATCGATCACCATTTAGTTTAGATGATGGATGAA | 552 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.044 | 0.037 | 0.153 | 3.945 | 15.538 | 28.611 |
| Raw | 2.912 | 2.800 | 24.583 | 1010.970 | 1335.027 | 2740.420 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_35423.1 | 828 | 2e-24 | 623 - 682 | 100 | 60 / 60 | plus | ABC01458 ABC01460 ABC01461 ABC01464 ABC01466 ABC01470 ABC32264 ABC34367 |
| MLOC | MLOC_32822.1 | 915 | 3e-21 | 570 - 629 | 97 | 58 / 60 | plus | ABC01458 ABC01460 ABC01461 ABC01464 ABC01466 ABC01470 ABC32264 ABC34367 |
| JLOC1 | JLOC1_22865.1 | 824 | 8e-25 | 619 - 678 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_21353.1 | 769 | 2e-21 | 557 - 616 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC32926 | 599 | 3e-25 | 540 - 599 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01467 | 610 | 4e-24 | 553 - 610 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC01461 | 723 | 1e-23 | 556 - 615 | 98 | 59 / 60 | plus | ABC01461 |
| Harvest21 | ABC01470 | 718 | 6e-22 | 548 - 607 | 97 | 58 / 60 | plus | ABC01470 |
| Harvest35 | U35_14427 | 612 | 3e-25 | 553 - 612 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37203 | 624 | 1e-23 | 556 - 615 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_14429 | 718 | 6e-22 | 548 - 607 | 97 | 58 / 60 | plus |
Contig Sequence (612 bp)
>U35_14427 612 Hv_44K_v2 ACAAACATAAACATTGAAGCGCGAGCTTGTAGCTCCCGCAAAAAGAAAGCAAGAGCCAAA CACCATGAGGACCATGTTCATCCTCGCTCTCATCGCCCTCGCGGTGACCAGCTCTGTTGC GCAACTAGACACTACCTGCATCGAGGGCTATGGGCAATGCCAGCAGCAGCCGCAGCAGAT GAACACATGCGCTGCTTTCCTACAACAGTGCAGCCCGATGTCATATGTACAATCACAGAT GTGGCAGGCAAGCGGTTGCGAGTTGATGTGGCAGCAGTGCTGCAGCCGTTGGCCCAGATC TCAGAGCAGGATAGGTGCCAGGCCGTCTGTAGCGTGGCACAGGTCATCATGCAGAAGCAG CAGCAGCAGCAAGGGCAAAGTTTTGGCCAGCCTCAGCAGCAGGTTCCGGTTGAGATAACG AGGATGGTGCTTCAGACCCTTCCGTCGATGTGCAGGGTGAACATCCCGCAACATTGCATC GACACCCCGTGCAACACCATCACTTAGAGCCCCTACAACATCCCTATGGTCGCTAACTGT GTTGGTGGTACCTGCTAAGATCTATGCTGCACTAGCTAGATCGATCACCATTTAGTTTAG ATGATGGATGAA
Homology of Contig U35_14427 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |