barSeed - Barley Seed Development Database

Probe CUST_9028_PI390587928

Source Contig U35_14428

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9028_PI390587928	Hv_44K_v2	TTGATGTGAAGAAGGTGGCCAAGACCGAGCCCAAGAAGGCCGTCAAGCAGATGAGGGTCT	792	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357540	2389	2e-24	877 - 936	100	60 / 60	plus	ABC01471
MLOC	MLOC_58175.2	2098	2e-24	1098 - 1157	100	60 / 60	minus	ABC01471
MLOC	MLOC_58175.1	2582	2e-24	1269 - 1328	100	60 / 60	minus	ABC01471
JLOC1	JLOC1_37769.1	2694	8e-25	997 - 1056	100	60 / 60	plus
Harvest21	ABC52895	635	3e-25	157 - 216	100	60 / 60	plus
Harvest21	ABC01471	2369	3e-25	1521 - 1580	100	60 / 60	minus	ABC01471
Harvest21	ABC01468	2006	3e-25	786 - 845	100	60 / 60	plus
Harvest35	U35_50636	635	3e-25	157 - 216	100	60 / 60	plus
Harvest35	U35_14428	910	3e-25	793 - 852	100	60 / 60	plus
Harvest35	U35_14423	2491	3e-25	906 - 965	100	60 / 60	plus

Contig Sequence (910 bp)

>U35_14428 910 Hv_44K_v2
TGGCTTCGTCTTCTCCGCCAGGAAGGAAGGATACAGAATCCATTGCTCCCCATCCAAGGG
CGGCGGCGACGATGTTGGAGGAGCTGCTGATCTTCACGCGGGGCGGGCTGATCCTGTGGT
CGTCCTGCCGGGCCCTGGGCGGGGCGGCGCTGCTCAAGGGCTCCCCCATCGACGCGCTCA
TCCGCTCCTGCCTGCTCGAGGAGCGCTCGGGCGACGCCGGATTCACCCAGGACGCCTACG
CGCTCAAGTGGACCTTCAACAACGACCTCGGCCTCGTCTTCGTCGCCGTATACCAGCGCA
TGCTCCACCTGCTCTACGTCGACGACCTGCTCGCCGCCGTCCGCAGGGACTTCTCCCAGA
TCTACAACCCCAACCGGATCTCCTATGACCATCTCTTCACAGACAAGTTCCGCCAGCTGC
ACCTCGAGGCCGAGGCGCGCGCCGAGGCCATGAAGAAGACCCGGCAGCAGCCCACCGCTC
TCTCCTCCTCCGCCGCCGGCGGCAAGGTCGGTGCTGCCAGCAAGAAGCTTGGTTCTAATG
CTCGCGGTGGCGGGAAGAAGAATTCTGGATCTGGGAAGGATGACTCTGACGGCGACTCGG
GGAAGGAGCACAACGGCTACACTGCTAACGGTGCCGATGGTGCGCACGAGAACGGTTCTC
ACGCCCGGGCTGCTGCTCTTGTTGTTAACAATGCTGGCAAGGAGAACGGGGACCCCAACG
ATGGGGCCTTCGATGTAAATACCTTACGTAAGAAGACAGGAGGAAAGAAGGGCGGTGGCG
GCGGCAAGAAGATTGATGTGAAGAAGGTGGCCAAGACCGAGCCCAAGAAGGCCGTCAAGC
AGATGAGGGTCTGGGACGACAAACCGCCCAAGAACGAGAAGCTGGACTTCACGGACCCAG
CTGACGAGAG

Homology of Contig U35_14428 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g37444.6	516	2e-88	protein\|signal recognition particle receptor, putative, expressed
Brachypodium v1_2	Bradi1g78220.1	624	1e-98
Arabidopsis v10	None