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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_9027_PI390587928Hv_44K_v2TGGCCAGTACTGTTGCAAGTGCAACATAGAAATAAGAAACCTTTGTTTCCGAATAAAAAA647GeneList: black
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0940.0780.2394.47219.82634.212
Raw 2.7912.68518.136523.180802.3841528.781



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_32822.19157e-23670 - 72610057 / 57plus ABC01458 ABC01460 ABC01461 ABC01464 ABC01466 ABC01470 ABC32264 ABC34367
JLOC1JLOC1_21353.17694e-23657 - 71310057 / 57plus
Harvest21ABC014707183e-25648 - 70710060 / 60plusABC01470
Harvest21ABC014617236e-22656 - 7159758 / 60plusABC01461
Harvest35U35_144297183e-25648 - 70710060 / 60plus
Harvest35U35_144247596e-22661 - 7209758 / 60plus



Contig Sequence (718 bp)

>U35_14429 718 Hv_44K_v2
ATAAACATTGAAGCGTGAGCTTGTAGCTCCTGCAAAAAGAAAGCAAGAGACAAACACCAT
GAAGACCATGTTCATCCTCGCTCTCATCGCCCTCGCGGTGACCAGCTCTCTTGCGCAACT
GGACACTACCTGCATCCAGGGCTATGAGCAATGCCAGCAGTAGCCGCAGCAGATGAACAC
ATGCGCTGCTTTCCTACAGCAGTGCAGCCCAACGTCATATGTACAATCACAGATGTGGCA
GGCAAGCGGTTGCCAGTTGATGCGGCAGCAGTGCTGCCAGCCGTTGGCCCAGATCTCAAA
GCAGGATAGGTGCCAGGCCGTCTGTAGCGTGGCACAAGTCATCATGCAGAAGGAGCAGCA
GCAGCAAGGGCAAAGTTTCGGCCAGCCTCAGCAGCAGGTTCCGGTTGAGATAACGAGGAT
GGTGCTTCAGACCCTTCCGTCAATGTGCAGGGTGAACATCCCGCAACATTGTGTCGACAC
CCCGTGCAGCACCATCACTCAGAGCCCCTACAACATCCCTATGGCTGCTACCAGTGTTGG
TGGTACGTGCTAAGATCTATGTTGCGCTAGCTAGATCGATCACCATTTAGTTTAGATGAT
GGATGAAGGGTGAAAAATAAAGTAAAAGTGCTATACATCATCATGTGTGGCCAGTACTGT
TGCAAGTGCAACATAGAAATAAGAAACCTTTGTTTCCGAATAAAAAAAAAAAAAAAAA



Homology of Contig U35_14429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None