barSeed - Barley Seed Development Database

Probe CUST_9018_PI390587928

Source Contig U35_14430

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9018_PI390587928	Hv_44K_v2	CAGGGGCACAAGACATGAACAAGATATTCATATGAATTGGGATGAATGATTAAAGTAATC	1580	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75288.1	1780	7e-23	1718 - 1778	98	60 / 61	plus	ABC01459 ABC31769 ABC34367
JLOC1	JLOC1_50219.1	1841	4e-23	1659 - 1719	98	60 / 61	plus
Harvest35	U35_14430	1664	3e-25	1581 - 1640	100	60 / 60	plus

Contig Sequence (1664 bp)

>U35_14430 1664 Hv_44K_v2
GTGTGCCATCACTCCCATCGCTTCCCCTGCCTCGTCCGCCGTTCCCCGTGAGGTGATTGG
CAGATTGCTTCTTCCTCCGCCGGGATCCCTCCGTCTCCATGGCCGCGATGTGGAGGGCCG
CCGCGAGGCAGCTCGTCGACCGGGCGGTCGGATCCAGGGCCGCGCACACGTCTGCAGGCA
GCAAGAAGATCGTCGGCGTGTTCTACCAGGCCGGCGAGTACGCCGACAAGAACCCCAACT
TCGTCGGCTGCGTCGAGGGTGCCCTCGGCATACGCGACTGGCTCGAGTCCAAGGGGCACC
ACTACATTGTCACCGACGACAAGGAGGGGTTGAACAGCGAGCTGGAGAAGCACATTGAAG
ACATGCATGTCCTGATAACCACCCCATTCCACCCAGCCTATGTTACTGCAGAGAGGATCA
AGAAGGCAAAGAACCTCGAGCTGCTTCTCACAGCTGGGATTGGCTCGGACCATATTGATT
TGCCAGCTGCTGCTGCTGCAGGCTTGACTGTGGCAGAGGTCACTGGAAGTAACACCGTCT
CTGTGGCAGAAGATGAGCTCATGCGCATCTTGATTCTGCTCAGGAACTTCTTGCCTGGCT
ATCAACAGGTCGTTAAAGGTGAATGGAATGTTGCAGGCATTGCCCATAGGGCTTATGATC
TTGAGGGAAAGACCGTCGGAACTGTCGGGGCAGGTCGTATTGGCAGGCTCTTACTTCAGC
GCCTGAAGCCCTTCAACTGCAACCTGCTCTACCATGACAGACTTCAGATCAACCCAGAGC
TTGAGAAAGAAATTGGGGCGAAATTTGAAGAGGACCTGGATGCTATGCTTCCAAAGTGTG
ATGTCGTTGTGATCAACACACCTCTTACTGAGAAAACTAGAGGCATGTTCAACAAAGAAA
AGATTGCGAAGATGAAGAAAGGTGTAATCATTGTGAATAACGCTCGGGGCGCAATCATGG
ATACCCAGGCTGTTGCTGATGCTTGCTCCAGCGGTCACATTGCTGGATACGGAGGTGATG
TCTGGTTCCCCCAACCCGCACCCAAGGATCACCCATGGCGCTACATGCCTAATCACGCAA
TGACCCCTCACATCTCTGGGACTACAATTGATGCACAGCTGAGGTACGCGGCTGGAGTGA
AGGACATGTTGGATAGGTACTTCAAGGGCGAGGAGTTCCCCGTGGAGAACTACATCGTCA
AGGAAGGCGAGCTCGCCAGCCAGTACAAGTAGTAACCCAACCCCTCCGACGCTGCATGGT
AACATATTTGAACTCTGAAGCGAGGCGTGAGAGAAGAAACCATTGTGTTGTTGTATGAGC
GTTCTCTGAGAACGGAAATAATGGATGTCTGCCTGGGGGTGCAACCATGGCAGTGAATAA
AAAGCTCTGGGACGAGGTTATCTGAAAAAAAAAAAAAAAAAAATGTGCTGTGTGTACTGC
TAGTTTTTTCTTTTTCTTTTGAGGGAAATATGTACTGTTAGTTTTGTGCTGGGAGCGCGA
AAGTAAGTGAGCAGCGACGCACAACATTTAAGCCTTTAACGTACTTCTATCAGTACAAAA
ATAGATAAAATTACTGAACACAGGGGCACAAGACATGAACAAGATATTCATATGAATTGG
GATGAATGATTAAAGTAATCTGCGTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_14430 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g29180.1	377	protein\|erythronate-4-phosphate dehydrogenase domain containing protein, expressed
Brachypodium v1_2	Bradi1g42270.1	378
Arabidopsis v10	AT5G14780.1	384	\| Symbols: FDH \| formate dehydrogenase \| chr5:4777043-4779190 FORWARD LENGTH=384