barSeed - Barley Seed Development Database

Probe CUST_9012_PI390587928

Source Contig U35_14436

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9012_PI390587928	Hv_44K_v2	TCAAGGAAGAAGGCTTTGGCTCATTGTGGAGAGGAAATACTGCCAACGTCATCCGTTACT	596	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55848.1	1699	2e-24	740 - 799	100	60 / 60	plus	ABC01534 ABC01536 ABC09567 ABC49628
JLOC1	JLOC1_36063.1	2080	8e-25	708 - 767	100	60 / 60	plus
Harvest21	ABC45025	276	3e-25	7 - 66	100	60 / 60	plus
Harvest21	ABC01536	1792	3e-25	563 - 622	100	60 / 60	plus	ABC01536
Harvest21	ABC01533	741	1e-23	597 - 656	98	59 / 60	plus
Harvest35	U35_14437	1755	3e-25	565 - 624	100	60 / 60	plus
Harvest35	U35_14436	656	3e-25	597 - 656	100	60 / 60	plus

Contig Sequence (656 bp)

>U35_14436 656 Hv_44K_v2
GGCAAATCCAAGAAGAACACCACTAGTACTGCATTCGAGCGAGCGAGGAAGAGGAAGAGC
GTGAGAGAGAGGGATGGCGTGCCTGCACGATCACGAGTGTGGGGATCACAACTGCGCCGC
CGATTGGTCGCTCTACAATCACATCGACACCACCCCAGCCTATCGCCCCGCCTCCGCTTC
CGAAGGGTCAGTGATGGCGGACCGTGCTAACCACCCGTCTGTCATGCAGAAGTTCGGTGG
GCAGTTCCACCTCAGCTCCAGCTTCTCTGAGGGTGTACGAGCTCGCAACATCTGCCCTTC
TGTGCCATCCTATGAGAGGCGCTTCACCACAAGCAGCTACATGACTCAGAGCCTTGGCAT
CAGAGCCCCAATGATGTCATCTTCTCCACTGTTTGCCAATGCACCCCCGGAGAAGAAAGG
CGCCAAGAACTTTGCGATCGATTTCCTCATGGGAGGAGTGTCTGCTGCAGTTTCCAAGAC
TGCTGCAGCTCCCATTGAGCGTGTTAAGCTGCTTATCCAGAACCAGGATGAGATGATCAA
GGCTGGCAGGCTCTCTGAGCCATACAAGGGTATTGGTGACTGCTTTGGACGCACCATCAA
GGAAGAAGGCTTTGGCTCATTGTGGAGAGGAAATACTGCCAACGTCATCCGTTACT

Homology of Contig U35_14436 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48720.2	383	7e-87	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi3g53520.1	385	4e-85
Arabidopsis v10	AT3G08580.1	381	3e-55	\| Symbols: AAC1 \| ADP/ATP carrier 1 \| chr3:2605706-2607030 REVERSE LENGTH=381