barSeed - Barley Seed Development Database

Probe CUST_9011_PI390587928

Source Contig U35_14437

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9011_PI390587928	Hv_44K_v2	TGATGATTCTTGCTGGTTTGCCTGTGCGAAATCTTGAAGATGATTGTTAAAATGTTGGTA	1671	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.029	2.171	1.204	0.549	0.109	0.111
Raw	4247.753	4762.413	2305.767	1670.997	115.657	129.755

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_36063.1	2080	4e-23	1810 - 1869	98	59 / 60	plus
Harvest21	ABC01536	1792	3e-25	1681 - 1740	100	60 / 60	plus	ABC01536
Harvest35	U35_14437	1755	3e-25	1672 - 1731	100	60 / 60	plus

Contig Sequence (1755 bp)

>U35_14437 1755 Hv_44K_v2
TCGAGCACTGTTGGCCTACCACTCGCATATATTCCCCCGCCCCGCAGCGCCAGGCCACCC
CTCTCTCTCTCTCTGCAAGACCTGAAGGAGCGGAGCCGCCGAGCCTGGGAAGAGCCACCA
CCCCAGCCTATCGCCCCGCCTCCGCTTCCGAAGGGTCAGTGATGGCGGACCGTGCTAACC
ACCCGTCTGTCATGCAGAAGTTCGGTGGGCAGTTCCACCTCAGCTCCAGCTTCTCTGAGG
GTGTACGAGCTCGCAACATCTGCCCTTCTGTGCCATCCTATGAGAGGCGCTTCACCACAA
GCAGCTACATGACTCAGAGCCTTGGCATCAGAGCCCCAATGATGTCATCTTCTCCACTGT
TTGCCAATGCACCCCCGGAGAAGAAAGGCGCCAAGAACTTTGCGATCGATTTCCTCATGG
GAGGAGTGTCTGCTGCAGTTTCCAAGACTGCTGCAGCTCCCATTGAGCGTGTTAAGCTGC
TTATCCAGAACCAGGATGAGATGATCAAGGCTGGCAGGCTCTCTGAGCCATACAAGGGTA
TTGGTGACTGCTTTGGACGCACCATCAAGGAAGAAGGCTTTGGCTCATTGTGGAGAGGAA
ATACTGCCAACGTCATCCGTTACTTCCCAACTCAGGCTTTGAACTTTGCATTCAAGGATT
ACTTCAAGAGGATGTTCAACTTCAAGAAGGACAAGGATGGTTACTGGAAGTGGTTCGGTG
GCAACCTTGCTTCTGGTGGTGCCGCTGGTGCTTCCTCGCTGTTCTTCGTGTACTCCCTTG
ACTATGCTAGGACAAGGCTGGCCAATGACGCAAAGGCATCCAAGGGTGGAGGTGAAAGGC
AGTTCAATGGCCTTGTTGATGTCTACCGCAAGACTCTCAAGTCAGATGGTATTGCTGGGC
TTTACCGTGGATTCAACATCTCCTGTGTTGGAATCATTGTCTACCGTGGTCTCTACTTTG
GGCTGTATGACTCTCTAAAGCCAGTTCTCCTTACTGGCACTCTCCAGGACAACTTCTTTG
CCAGCTTTGCTCTTGGTTGGTTGATCACCAACGGTGCGGGTCTTGCATCTTACCCCATTG
ACACGGTCCGCAGAAGGATGATGATGACCTCCGGGGAGGCTGTCAAGTACAAGAGCTCCT
TGGATGCTTTCAATCAGATCCTGGCTAAGGAGGGTGCCAAGTCCCTCTTCAAGGGTGCTG
GTGCTAACATCCTCCGTGCCATTGCTGGTGCTGGTGTGCTCTCCGGCTACGATCAGCTCC
AGATCCTCTTCTTCGGCAAGAAGTATGGCTCAGGCGGTGCCTAGAGGGGAAGAAATGATG
ACGAACAAGAGAAGTCTGTTCCCAGTCCTGCCCTTCGAGGATCTGGCGAACTTTTATCTT
TTTAACGTTGGAAGGCAATAATTTCTGTAGAGGGTGGATTTTCCCAACATTCGTTTTTGG
TGGAGGCATCGAACTCCAGAGGTTGTCGTAGGTTGGCGGCAGCGTTCTCAAAACATTTAC
TATCATAGGGTTGAGTTTGAGTTCGAGTATGTGCCCTGAATCGTTACTGGGCAATTTTCC
TTAAATACATTGTCCTCGAATCCGACTGAGATTATGGTCAAGTTTATCCTGTTGGTGTTA
AAAAAAAAAAAAAAAACTGTTTATCCTGTTGCCTTTGCCTGTTAGATAGCTTGATGATTC
TTGCTGGTTTGCCTGTGCGAAATCTTGAAGATGATTGTTAAAATGTTGGTATTCTATTAA
AAAAAAAAAAAAAAA

Homology of Contig U35_14437 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g48720.2	383	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi3g53520.1	385
Arabidopsis v10	AT3G08580.1	381	\| Symbols: AAC1 \| ADP/ATP carrier 1 \| chr3:2605706-2607030 REVERSE LENGTH=381