barSeed - Barley Seed Development Database

Probe CUST_900_PI390587928

Source Contig U35_6374

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_900_PI390587928	Hv_44K_v2	GACATCTGGAGGATCATCTTTCACACAGCAGTACCACTTGTGAATTGTGATGATGTCGTC	605	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372199	891	2e-24	609 - 668	100	60 / 60	plus	ABC13932
MLOC	MLOC_36433.1	700	2e-24	202 - 261	100	60 / 60	plus	ABC13932
JLOC1	JLOC1_23455.1	765	8e-25	202 - 261	100	60 / 60	plus
Harvest21	ABC13932	665	3e-25	606 - 665	100	60 / 60	plus	ABC13932
Harvest35	U35_6374	665	3e-25	606 - 665	100	60 / 60	plus

Contig Sequence (665 bp)

>U35_6374 665 Hv_44K_v2
GCGGCAAGCAACCAAGAAACAGCTGCTTCATTAGCTTCTTCCCTCGCGAAGATCACAGGA
CGAGGAGAGAAAGGGAAGGGAGTGATATTTTCAGAGATTTCCGAGGAGAGTGAAAAGAGA
GCGATCAAGAACCGAAGATGTGCATGGACCGATCACCGGTGCCGGCCAAGAAGATCTGGC
TTGCCATCGCCTCCCGCCTCGGCCTCCGGCCAACAGCTGGGCTGAGGAAGCTGAGGAAGG
AGGTGAGGACGTGCGAGTACCGCGACGTGCACATCATGTGGGAGATGCTGAGGGAGATGG
ACTCCCCGGTGCCCCTCGAGGAGAAGGAGGCCGCCGCCGCCGCGGCTGTCGCGGCGGCCG
CCGGCGCCAGGAAGAAGAAGGCGGCGTGGAGCCGCTTCGTCTACTACTGCTGCGCGTTCT
GAGGTCCACGTGATGTGATCAGATCGATGGACACAGCCAGCTAGAACCAGGCCGTCAGAG
TTGTAGGGCAAGCTGGTAGAGAGGCCGTGTGTAGATAGATACAGCATTGGCCATCTAACA
GTCTGTGCAGATAACAAACGCGTGTGGATCCAAGCTGCCGGCAATGCTGGGTCGTACGCG
CGCGGGACATCTGGAGGATCATCTTTCACACAGCAGTACCACTTGTGAATTGTGATGATG
TCGTC

Homology of Contig U35_6374 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None