- Probe CUST_9008_PI390587928
- Source Contig U35_14439
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9008_PI390587928 | Hv_44K_v2 | TACACTTCCTACTTTGGTAAATGTATAATCGGGTGGACATTTTGAGCCCGTATGCACGGG | 555 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.760 | 4.775 | 1.267 | 0.705 | 0.267 | 0.388 |
| Raw | 1520.500 | 2073.206 | 457.591 | 431.127 | 51.171 | 85.806 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354522 | 634 | 2e-24 | 554 - 613 | 100 | 60 / 60 | plus | ABC01419 ABC49768 ABC49804 |
| JLOC1 | JLOC1_28098.1 | 1140 | 4e-23 | 707 - 766 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01415 | 732 | 3e-25 | 614 - 673 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01416 | 634 | 1e-23 | 479 - 538 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC49804 | 660 | 5e-23 | 472 - 527 | 100 | 56 / 56 | minus | ABC49804 |
| Harvest21 | ABC49452 | 286 | 5e-23 | 3 - 61 | 98 | 58 / 59 | minus | |
| Harvest21 | ABC01418 | 716 | 6e-22 | 560 - 619 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01419 | 452 | 8e-21 | 385 - 436 | 100 | 52 / 52 | plus | ABC01419 |
| Harvest35 | U35_14439 | 693 | 3e-25 | 556 - 615 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14438 | 879 | 3e-25 | 612 - 671 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14440 | 452 | 8e-21 | 385 - 436 | 100 | 52 / 52 | plus |
Contig Sequence (693 bp)
>U35_14439 693 Hv_44K_v2 GCACGAGGGACAGGCATAGCTTGAGAGAGAGCGCGAGCGAGATGGCAGCCTCCATGATCA CCTCGCCGATTGTGGCGCCGACGAGCCTGCCGTCCCTCTCCCGCCGGGGCTCCTCCTTCG CCGTCGTCTGCAGCGGTGGCAAGAAGATCAAGGTCGACAAGCCCCTCGGACTCGGAGGCG GCTTGACCGTCGACATCGACGCCAACGGCAGGAAGGTCGGCAAGAAGGGTGTCTACCAGT TTGTTGACAAGTACGGCGCCAACGTCGACGGCTACAGCCCAATCTACACGCCAGAGGAAT GGTCCGAATCTGGTGACCGCTACGCCGGTGGAACGACCGGGCTTCTTATCTGGGCCGTCA CCCTCGCCGGCCTCCTCGGCGGCGGCGCCCTCCTCGTCTACAACACCAGCGCTCTCGCCG GCTAAGAAAGCATCTACCTGTAACACGGGGCCGAGTTTCTACTCTGTAATCTACGTAGCT ACCATGTGAATGTATGTCATCAACGATGCAAAGTAATTCATCCGAACAGATGGTTTGTAC GTAACGCTGTTACTATACACTTCCTACTTTGGTAAATGTATAATCGGGTGGACATTTTGA GCCCGTATGCACGGGGACCTCCTAAAAAAAAAAAAAAAAATATTGAGGGGTATTATTCAA AAAAAAAAAAAAAAAGCGCTTATGTGCCGCCTA
Homology of Contig U35_14439 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g10020.2 | 131 | 6e-62 | protein|photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed |
| Brachypodium v1_2 | Bradi3g17640.2 | 128 | 1e-71 | |
| Arabidopsis v10 | None |