barSeed - Barley Seed Development Database

Probe CUST_89_PI390587928

Source Contig U35_48880

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_89_PI390587928	Hv_44K_v2	ATTTTTTCAAAGATGTGCATAAGAATAGAAAAGAAGATGGCTGTTCGCCGACACGTTAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11956.1	903	7e-23	23 - 79	100	57 / 57	minus	ABC15595
Harvest35	U35_48880	583	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (583 bp)

>U35_48880 583 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACGTGTCGGCGAACAGCCATCTTCTTTTCTATTCTTATGCAC
ATCTTTGAAAAAATAAGGCCCTAAAAAATTAAGCTGATCTATCGTATTGAAATTGATGAA
GTTGTCACAGTCATCTTCTTTTACTATTTCGTCACGGCCATCCTTTTTTACTCTACGTAC
ATCACCGAAAAAACTAAATTGGAAACGTATGAAGAGCTGAACATAGTAGACCGGCCGGGG
ATTATACCGCTGTCTTGGTTTTGTATAGCTTCACTTGTTCACATACATAGTAGTTTACCA
CAAAACTACTCCTACCACTTCGTCTCAAAAAAGAAAAAGAAAATCCTACTACATACACTA
CACAAACGTGTCGGCGAACAGCCGGAGATAAAAACACGAGCTGATCGAACTCAGTAGCCG
CTGTCCACTGGGAAAACGTACGGCGGGTCGTCCACCGGCACGTCGCTGAACCCGTCGCCT
CCGGTGTAGAACCCAGCGAAGTCGGCCCCTGGTTCCCGCACGAAGACATCCTGCCGGTCG
GTGCCGTACAACATCCCGTCGCCGTCGACGCGCATCTTCTTTC

Homology of Contig U35_48880 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None