barSeed - Barley Seed Development Database

Probe CUST_8997_PI390587928

Source Contig U35_26415

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8997_PI390587928	Hv_44K_v2	ATCTCAACTACCCATCCTTCATCGCCTTCTTCGACACGACCGGAGAGAGGGCGTTCGTGA	275	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356015	2835	2e-24	2366 - 2425	100	60 / 60	plus	ABC05026 ABC05028 ABC18723
MLOC	MLOC_64945.1	2912	2e-24	2286 - 2345	100	60 / 60	plus	ABC18723
JLOC1	JLOC1_42688.1	2857	8e-25	2163 - 2222	100	60 / 60	plus
Harvest21	ABC22294	422	3e-25	276 - 335	100	60 / 60	plus
Harvest35	U35_26415	423	3e-25	276 - 335	100	60 / 60	plus

Contig Sequence (423 bp)

>U35_26415 423 Hv_44K_v2
GGTGCGGTCGGCGATGATGACGACGGCTAGCGCGGTGGACAACACCTTCGCACCCATCAA
GGACATGTCCGGCGGCAACCAGAACGGGCCAGCATCACCGCTCGCAATGGGGTCCGGGCA
CCTCGACCCGAACCGCGCCCTGAACCCTGGACTGGTCTACGACGCCGGGCCGGGCGACTA
CATCAAGCTCATGTGCGCCATGAACTACACCACGGCGCAGATCAAGACCGTGGCGCAGTC
GTCGGCCCCCGTGGACTGCGCAGGCGCGTCGCTCGATCTCAACTACCCATCCTTCATCGC
CTTCTTCGACACGACCGGAGAGAGGGCGTTCGTGAGGACCGTGACCAACGTGGGCGACGG
GCCGGCGGGGTACAACGCCACCGTGGAGGGACTGGACGGGCTGAAAGTGACCGTCGTGCC
GAA

Homology of Contig U35_26415 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g36010.1	762	1e-59	protein\|OsSub47 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi2g24220.1	755	9e-61
Arabidopsis v10	None