barSeed - Barley Seed Development Database

Probe CUST_8990_PI390587928

Source Contig U35_14440

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8990_PI390587928	Hv_44K_v2	CTATACACTTCCTACTTTGGTAAATGTATAATCGGGTGGACATTTTGAGCCCGTAAAAAA	381	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.129	4.906	1.289	0.700	0.275	0.397
Raw	1371.097	1821.042	396.053	368.803	45.076	74.021

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354522	634	9e-22	551 - 605	100	55 / 55	plus	ABC01419 ABC49768 ABC49804
Harvest21	ABC01419	452	3e-25	382 - 441	100	60 / 60	plus	ABC01419
Harvest21	ABC49804	660	2e-22	476 - 530	100	55 / 55	minus	ABC49804
Harvest21	ABC01415	732	2e-22	611 - 665	100	55 / 55	plus
Harvest21	ABC01416	634	8e-21	476 - 530	98	54 / 55	plus
Harvest35	U35_14440	452	3e-25	382 - 441	100	60 / 60	plus
Harvest35	U35_14439	693	2e-22	553 - 607	100	55 / 55	plus
Harvest35	U35_14438	879	2e-22	609 - 663	100	55 / 55	plus

Contig Sequence (452 bp)

>U35_14440 452 Hv_44K_v2
CGAGCCTGCCGTCCCTCTCCCGCCGGGGCTCCTCCTTCGCCGTCGTCTGCAGCGGTGGCA
AGAAGATCAAGGTCGACAAGCCCCTCGGACTCGGGGGACGGCTACAGCCCAATCTACACG
CCAGAGGAATGGTCCGAATCTGGTGACCGCTACGCCGGTGGAACGACCGGGCTTCTTATC
TGGGCCGTCACCCTCGCCGGCCTCCTCGGCGGCGGCGCCCTCCTCGTCTACAATACCAGC
GCTCTCGCCGGCTAAGAAAGCATCTACCTGTAACACGGGCCGAGTTTCTACTCTGTAATC
TACGTAGCTATAATGTGCATGTATGTCATCAACGGTGCAAAGTAATTCATCCGAACAGAT
GGTTTGTACGTAACGCTGTTACTATACACTTCCTACTTTGGTAAATGTATAATCGGGTGG
ACATTTTGAGCCCGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None