barSeed - Barley Seed Development Database

Probe CUST_8979_PI390587928

Source Contig U35_40712

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8979_PI390587928	Hv_44K_v2	CCGTTATTGAGAATTATCTCGATTGATCTGTGGATGGACGATGCAGTGTGACAAGTCGTG	268	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40948.1	365	9e-22	1 - 55	100	55 / 55	plus	ABC37511
JLOC1	JLOC1_26735.1	357	5e-22	1 - 55	100	55 / 55	plus
Harvest35	U35_40712	594	3e-25	269 - 328	100	60 / 60	minus

Contig Sequence (594 bp)

>U35_40712 594 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAGCCCGAAGCACCCACTTTAGTTTAAGCTAAAGTACATGCAG
TTTACTGTAACAAAAGATGGTAACTTATTAGTAGCATGGTATCTAATCGACCACATGATC
CACAGTAGCTGGCATGCATGGTCCCTTATTGCTGGCTGGTTCATGATATAGCACAAAGTT
TACACAGAATGGTCCATCCATCATCCATGGCAAATCCATCCATCACATGCTTGGCTTCAC
GTTGAGGCGGTTCGCCACCTTCATCCCGCACGACTTGTCACACTGCATCGTCCATCCACA
GATCAATCGAGATAATTCTCAATAACGGAAGAAAATTCAGCGTAAATCCATTGATTCATG
CATAAATAATTATTGGGTCCAATCACTTGATGAATCATTAGTTACCTTGGAGAGGAAGTC
GATCCAAATGACACGCAGCTCGTGGCTGACCTTGGGGTGCGCGAGCGCGTCGGAAAAACG
GCGCACGAACCTGTCCTGGCGGTCGGGCGCCCAGCTGCGGTACCTCTCCCCGGGCTGCAC
GAAGTCGTTCTCCTTCTTGATCCTCGTCTTCTCCCTCTTTCCAACCACGGGCCT

Homology of Contig U35_40712 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None