barSeed - Barley Seed Development Database

Probe CUST_8974_PI390587928

Source Contig U35_26422

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8974_PI390587928	Hv_44K_v2	GTACGCCGTGCTCACGCCCACCCGGCACGTCGACCTGGGCCCGCGGGACGACCCGGCGTT	279	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.126	0.229	1.874	2.372	1.107	1.267
Raw	7.817	24.496	175.736	339.507	60.224	71.866

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64633.2	1616	2e-24	1138 - 1197	100	60 / 60	minus	ABC17178
JLOC1	JLOC1_42465.1	1640	8e-25	389 - 448	100	60 / 60	plus
Harvest21	ABC23040	338	1e-24	280 - 338	100	59 / 59	plus
Harvest35	U35_26422	339	3e-25	280 - 339	100	60 / 60	plus

Contig Sequence (339 bp)

>U35_26422 339 Hv_44K_v2
ACTTCCAGAGGAACGGGAGGAAACCATGGCCGCGCAGCCGGCGGGGCGCTCGTTCGACGT
GATCGTGGTGGGCGCGGGCATCATGGGCAGCTGCGCGGCGCACGCGGCGGCGTCCCGGGG
CGCGCGCGTGCTCCTGCTCGAGCAGTTCGACCTGCTCCACCAGCGCGGCTCGTCGCACGG
CGAGTCCCGCACCATCCGCGCCACCTACCCGCAGCCGCACTACCCGCCCATGGTCCGCCT
CTCGCGCCGCCTCTGGGACGACGCCCAGCGGGACTCCGGGTACGCCGTGCTCACGCCCAC
CCGGCACGTCGACCTGGGCCCGCGGGACGACCCGGCGTT

Homology of Contig U35_26422 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None