barSeed - Barley Seed Development Database

Probe CUST_8973_PI390587928

Source Contig U35_26423

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8973_PI390587928	Hv_44K_v2	GTTGGAGCAGTGCTTAGCCAAGGCCATTGATCGCCACCGAAAACCTCCCTCTCTCTCTCT	7	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59388.1	984	2e-24	41 - 100	100	60 / 60	plus	ABC03205
JLOC1	JLOC1_38648.1	1232	8e-25	229 - 288	100	60 / 60	plus
Harvest21	ABC22288	412	3e-25	8 - 67	100	60 / 60	plus
Harvest35	U35_26423	412	3e-25	8 - 67	100	60 / 60	plus

Contig Sequence (412 bp)

>U35_26423 412 Hv_44K_v2
GTCCGCGGTTGGAGCAGTGCTTAGCCAAGGCCATTGATCGCCACCGAAAACCTCCCTCTC
TCTCTCTCTTCTCGGTTCGCCGCGCCTCGCCTCGCCTCGCCACTAGTCCCATCGGATCTG
TCCAGCTGACGATGCCGCCCATGGCGAACACGACGGCGACGGACTCCGCGGCGCGGCGCT
TCGCCGTGGCATGCGGCGTGCTCAGCCAGTACGTCAAGGCGTCCGGCGTGGCGGTGCCGA
TGGCGTCGACGGGTAGCTGCGGGACGGAGCAGCGCGTGATGGGGGGCCTTGTCCAGGAAC
CCGGCTCGCCGGCGGACGGGGCGCAGCAGCTGACCATCTTCTACGGAGGGAGGGTGGTGG
TGCTCCACAGCTGCACGTCGGCCAGGGCCGCCGAGCTGATCCGGTTCGCCGC

Homology of Contig U35_26423 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None