barSeed - Barley Seed Development Database

Probe CUST_8971_PI390587928

Source Contig U35_26426

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8971_PI390587928	Hv_44K_v2	TTTGATTCCGCGCAGTCGAGGGAGTTCCGCAAGATCGTGCAGGGCGTCATCAGCGAGCTG	367	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44349.1	2704	2e-24	2294 - 2353	100	60 / 60	minus	ABC20471
JLOC1	JLOC1_28741.1	2762	8e-25	2352 - 2411	100	60 / 60	minus
Harvest21	ABC51503	413	3e-25	298 - 357	100	60 / 60	plus
Harvest35	U35_26426	483	3e-25	368 - 427	100	60 / 60	plus

Contig Sequence (483 bp)

>U35_26426 483 Hv_44K_v2
TCGAGCACTGTTGGCCTACGTGGCTCCCCCTCCCCCTCGCGAGATCTCCCGACTCCAATG
CCGCCCGCCTCCTCCCGCTCCTCCCAAACCTAGCCCCAACCCAGCCACCCAGTAGAAGCC
GGCGGCCATGTCGACGGATCGGGAGAAGGAGCGGGAGGCGGAGCTGGAGGGCGCCATGTA
CACCAACTGCCTCCTCCTCGGCCTCGATCCCGCCGTCCTCGGCTCCCCCGCCGGCGCCGT
CCCCACGCGCGTCGGCCTCTTCCGCCACTCCAACCCTCGCCTCGGCGAGCAGCTCCTCTA
CTTCCTCCTGTCCTCGCTCCGCGGCCCCGCGCAGTCCGCCAAGGACTTCGACAAGGTGTG
GCCCATCTTTGATTCCGCGCAGTCGAGGGAGTTCCGCAAGATCGTGCAGGGCGTCATCAG
CGAGCTGGAGCAGCAGGGGGCGCTGCCGCGGAGCAACTCCAGGGTTTCGTCCCTCGCCAC
CTG

Homology of Contig U35_26426 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g22370.3	500	7e-65	protein\|expressed protein
Brachypodium v1_2	Bradi4g39430.1	712	1e-69
Arabidopsis v10	AT5G40740.1	741	3e-58	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:16302229-16306371 REVERSE LENGTH=741