barSeed - Barley Seed Development Database

Probe CUST_896_PI390587928

Source Contig U35_6378

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_896_PI390587928	Hv_44K_v2	CTATAAGCCTGATCTTGCAAGTGAATACCCGGTTGTTGATGGGAAACTATCTCAAACGTG	723	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.072	1.041	1.408	1.434	0.655	0.671
Raw	111.961	153.770	201.026	341.293	50.899	58.656

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62700.3	964	2e-24	141 - 200	100	60 / 60	minus	None
MLOC	MLOC_62700.2	1846	2e-24	999 - 1058	100	60 / 60	minus	ABC24574
MLOC	MLOC_62700.1	1850	2e-24	995 - 1054	100	60 / 60	minus	ABC24574
JLOC1	JLOC1_41054.2	2113	8e-25	840 - 899	100	60 / 60	plus
JLOC1	JLOC1_41054.1	2664	8e-25	698 - 757	100	60 / 60	plus
Harvest21	ABC13540	786	3e-25	724 - 783	100	60 / 60	plus
Harvest35	U35_6378	786	3e-25	724 - 783	100	60 / 60	plus

Contig Sequence (786 bp)

>U35_6378 786 Hv_44K_v2
TTATCCCCGACGTGCTCCGCGTCCCCGGCGCTGCCAAGTACACGAACTCTCTCACGTCAC
ACACGCCTCCTCCTCCTCCTCCTGCGAGCCAGCCCAGCCACTGGGAGCGCCCGCGGAAGC
ACAGAGCGGGAGGAGGGATCGCGAGATGGACTGCAAGGATGTCGGGATCCTCGCCATGGA
CATGTACTTCCCTCCCACCTGCGTCCAGCAGGAAGCGCTGGAGGTTCATGACGGGGCCAG
CAAGGGGAAGTACACAATTGGTCTTGGGCAAGACTGCATGGCCTTCTGCAGCGAGGTAGA
AGATGTCATCTCGATGAGTTTGACAGTTGTCAAATCCCTGCTGGAAAAGTACCACATAGA
TCCAAAGCTAATTGGCCGCCTGGAGGTCGGTAGCGAGACAGTGATAGACAAAAGTAAATC
CATCAAAACGTGGCTGATGCAAATTTTTGAGGAAAGTGGTAATACTGACATTGAGGGAGT
TGACTCGAGTAACGCATGTTATGGTGGGACAGCTGCCCTGTTGAACTGTGTGAATTGGGT
CGAAAGTCGATGCTGGGATGGACGCTACGGCCTTGTGGTCTGCACAGATAGCGCGGTTTA
TGCAGAGGGACCAGCTCGGCCTACGGGTGGAGCTGCTGCAATTGCTATGCTTATTGGTCC
AAATGCACCTATTTCTTTTGAAAGTAAATATAGAGCTTCTCACATGGCTCATGTTTACGA
TTTCTATAAGCCTGATCTTGCAAGTGAATACCCGGTTGTTGATGGGAAACTATCTCAAAC
GTGCTA

Homology of Contig U35_6378 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g34960.1	477	7e-140	protein\|hydroxymethylglutaryl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi3g42010.1	468	4e-151
Arabidopsis v10	AT4G11820.2	461	7e-131	\| Symbols: MVA1, FKP1 \| hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase \| chr4:7109124-7111901 REVERSE LENGTH=461