barSeed - Barley Seed Development Database

Probe CUST_8969_PI390587928

Source Contig U35_26428

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8969_PI390587928	Hv_44K_v2	TGTTGCTACTTCGTACATTGAGACACAGTCGATTAAAGCTCGAGAGCAGCAGTCATCATC	460	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373991	3081	2e-24	344 - 403	100	60 / 60	plus	None
MLOC	MLOC_75275.2	626	2e-24	232 - 291	100	60 / 60	plus	None
MLOC	MLOC_75275.3	628	2e-24	231 - 290	100	60 / 60	plus	None
MLOC	MLOC_75275.1	1164	2e-24	858 - 917	100	60 / 60	plus	None
JLOC1	JLOC1_50208.1	971	8e-25	300 - 359	100	60 / 60	plus
Harvest21	ABC28175	578	3e-25	375 - 434	100	60 / 60	plus
Harvest35	U35_26428	664	3e-25	461 - 520	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_26428 664 Hv_44K_v2
TCCCCTGTTCATCTCTTCCTTTTTATTCCGTTCCTCTGTTCCTGCACTTCCCCTCCCCTC
CCCTCCCCTCTCCGCCCCCCCGTATTAAATCACCGCGCATCTACCTTCTCTCCTCTCCAA
TTGATTTCTTTTTTTCAAAGAAGCAACTTGCGTTTCCGCTTTGCAAAGTGGCGTCGAGGT
TGGATTCGGGGCGGAATTGTGGCCGCGAGGAGGAGGAGGCGCGGGACGAGGCGGCAGCCA
TGGCGCAGGATTCTTGGGACGCAGACAAGATCAGCTTGGATGTGTACATCCATGACTACC
TGGTGAAGCGGAACTTGCAGAGCACTGCGAAGGCGTTCCAAGCCGAATCCAACCTGTCTC
CAGATCCTGTTGCAATTGACGCCCCAGGGGGTTTCCTCTTCGAATGGTGGTCGGTCTTCT
GGGACATCTTCATTTCAAGGACCAACGACAAGCATTCCGATGTTGCTACTTCGTACATTG
AGACACAGTCGATTAAAGCTCGAGAGCAGCAGTCATCATCGCAGCAACAGCAGCAACATC
CTCATTCCCAGCAGTCGCCACAGCAGATCCAAATGCAGCAACTCATGCTACAGAGGCAGC
AGCCGGAGGAACAACAACAGGAGCAGCACCAACAACAGCAACAACATTCTCAGCAGCAGC
AACG

Homology of Contig U35_26428 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None