barSeed - Barley Seed Development Database

Probe CUST_8961_PI390587928

Source Contig U35_4965

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8961_PI390587928	Hv_44K_v2	TTGTGACACATTCTGGGCCATGATCCACTGACTGGCTGTTAATTGGTAGAAGTTGTAGAC	1153	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.587	3.728	1.125	0.900	0.383	0.532
Raw	877.374	1136.960	294.217	393.263	54.880	84.232

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358707	1298	2e-24	1146 - 1205	100	60 / 60	plus	ABC11136
MLOC	MLOC_57618.1	1188	7e-23	985 - 1045	98	60 / 61	plus	ABC11136
MLOC	MLOC_57618.2	1185	7e-23	982 - 1042	98	60 / 61	plus	ABC11136
JLOC1	JLOC1_37367.2	927	4e-23	714 - 774	98	60 / 61	plus
JLOC1	JLOC1_37367.1	1114	4e-23	901 - 961	98	60 / 61	plus
Harvest21	ABC11136	1237	3e-25	1154 - 1213	100	60 / 60	plus	ABC11136
Harvest21	ABC11135	922	6e-22	852 - 912	97	59 / 61	plus
Harvest35	U35_4965	1237	3e-25	1154 - 1213	100	60 / 60	plus

Contig Sequence (1237 bp)

>U35_4965 1237 Hv_44K_v2
GTGCTCTCTCTCTCTTTCTTGGGGGTGACTGAAGCGGCGGCGGCGGCGGCGGCCGGAGTG
GACGGCGGCGGCGCAGCCTACCCGGAGGAGAAGGGCGCTCCCCCAGCTTCTACGGCCTGC
CGCGGAGCCCGGTGTAACCCTAGGGCTCCGGTTGGTCCCATCTCCCCCCGCTGCCTCACT
CCGGAGAAGAGGAATCCGCCGGCGGCCTCGAGATCTCCAGATTGGCCGGATATGGATCTA
ATTCTTCCATTTAGAATTGGAGATTTTGCCGAGGCAAAGTGCTTTGATGAAGGTTTCAAA
GGCGCATGGTTTCGCTCCAAGATAAAAGATATGCGTATCGCAGAATCTGGGCATCTTGAG
TATTACTTGGAGTATATTGACTATACTGACGAAGCCGACGAATGGATTAGAGTCTTTCAA
AAGAACCCATTCAAGCCAGCATGCCTGGAAGGGAAATCAAATGACAGTACTGAAATAATG
TTGCGTCCTTCCTTTCCTCGGTGGTATAGGGGGCAACAAGTTCCTAAGCACTTTCCAAAG
AGCGAGGTGATAGCACGTGTTTGTGATACCTGGAAAGTAGGTGATTGGGTTGACTGGCAT
AATAAAGATTGTTACTGGACTGGGCAGATTATTGAGTCAACCAGTAAAAATGTGGTTGAG
GTAAAGTTCTTGGATCATCCCATGGGTGAAGGCGAGCAACGTTCTGCTAAGATAAAGGAC
CTGAGGCCTGCGCTGGATTGGTCCATGATTAAAGGCTGGACTGTACCTCTTTCGGCGGCA
AAAGGGAAATGCTGGCAAGCTGCTCATCTGGTTCATCCAAAATCTGATGTAGAAGAAAGG
AGCGACACGGATGAAGATGAAGAAGCTCTGGGATCTTCATCAACCATCAAAACGCCTTCA
TCAGACCCTAGTCAACGGGGTACCCGCAGTTCCAGTAGGCGACAAATGTCTCCATTGGAG
CCTGCCCCCATCGAACCGAATAGAAGCGGTTCCCGCCGGTATGCCTTTCGGGCCCGGAAG
AGCGTGGCGGAACAGCAGAGATAAGCTGGCCACACTAGCTTTATATTCGCCGAGGAAATG
GCCGATCGCTGTGTTTGCGGAATCGGCCGGCCACATAGGCAGCATGGCGTAGGGAGACTT
TTCGTGACATTTCTTGTGACACATTCTGGGCCATGATCCACTGACTGGCTGTTAATTGGT
AGAAGTTGTAGACTTTTATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4965 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g04860.1	274	3e-75	protein\|agenet domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g36700.1	317	3e-88
Arabidopsis v10	None