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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_8960_PI390587928Hv_44K_v2GTAGTCTTATGTGTCGACTTTTCGGACTGAAAAAATTTCGAAGCCTGTCGGTGTGCTAAA485GeneList: orangered4
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.6943.0131.1280.8500.6121.013
Raw 96.435173.76055.04264.05616.16230.018



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_51316.412113e-211155 - 12119856 / 57plus ABC10732
JLOC1JLOC1_32774.514965e-221054 - 11119857 / 58plus
JLOC1JLOC1_32774.410425e-22600 - 6579857 / 58plus
JLOC1JLOC1_32774.311005e-22658 - 7159857 / 58plus
JLOC1JLOC1_32774.211165e-22674 - 7319857 / 58plus
JLOC1JLOC1_32774.110585e-22616 - 6739857 / 58plus
Harvest21ABC107315521e-23478 - 5379859 / 60plus
Harvest35U35_49665603e-25486 - 54510060 / 60plus



Contig Sequence (560 bp)

>U35_4966 560 Hv_44K_v2
AGATCAAGGGCACGGCATCATCACACGACTCTCCTGCGCAACGAAATCGAGAGATTGCAG
GCAGCGAGCACACGAATTCCATGAGGGGGAGTGCGAGGTCTCTAGTGGAAACTGCAACCA
GACAAATCAAACCTGGCAATGGATTTGCGAGGTTGATGACGATTACAACTCCCCAGAAGC
ATGAGAAGGGGATCAACCCTACTCAATCCGCCCTCCCAAAGGATGAAAACGTCGAGCCCC
TCGTCGCTTTCAGCCGGCCGCCTCCTTTGCCACCGGTTCTAGGCCCTTTGATCGCGCTCT
CGCTTTTTCAGACTTCGTCTACTGATGAAGACAAGAAATGAGTCACCAGTTCTGTGCAGG
GGAGTTGCTTGTATGATCGCTGAGTTGGTTACTTTTCGGAGCCTGGCCGTGTATATACTC
GGAAGTTGTACACATCATGTCACTAGTAGTCTGGCAAGTACTCCTACTACGGAATCTGAA
CAATAGTAGTCTTATGTGTCGACTTTTCGGACTGAAAAAATTTCGAAGCCTGTCGGTGTG
CTAAAAAAAAAAAAAAAAAA



Homology of Contig U35_4966 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None