barSeed - Barley Seed Development Database

Probe CUST_895_PI390587928

Source Contig U35_6379

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_895_PI390587928	Hv_44K_v2	TGATCGATGCTGCTAAAATAGCAGATCTTGCTCTGCTGCTTATTGATGGTAGCTATGGAT	576	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60118.2	2837	2e-24	541 - 600	100	60 / 60	plus	None
MLOC	MLOC_60118.1	2856	2e-24	561 - 620	100	60 / 60	plus	None
JLOC1	JLOC1_39174.1	2856	8e-25	561 - 620	100	60 / 60	plus
Harvest21	ABC24325	582	1e-24	524 - 582	100	59 / 59	plus
Harvest35	U35_6379	636	3e-25	577 - 636	100	60 / 60	plus

Contig Sequence (636 bp)

>U35_6379 636 Hv_44K_v2
TGGATATCGGTCGGTACCACAGAGCGTATACGGAACAGATCACTAACGCAGCTCCCAAAA
CCCTCGCCCTCCACTCTCCTCCTTTCCGGCGGCCATCCCTCTCCGCCGCCGCAAAAACCC
CGCGAGCACCGCCTCCGCAAAACCCTCCTCACCATGGCTCCGGGGGAAGCCGGCGTCGAG
CAGCCGCGTAAGGCGCATCGCGTGGCCAAGTCGGGCGCGAAGGCGCGGAAGAAGAAGGGC
AAGGGCGCCGCCGGCGATGATGAAGGGGGCGAGAGGAAGAACCCCAAGGCTTTTGCCTTC
CGTTCAGCAACAAAAGCGAAGCGGCTACAATCTCGATCAGCGGAAATTGAACAACGCCGT
CTCCATGTGCCAATCATGGATCGCTCAATTGGGGAACCACCTCCTTTTGTTGTCGTAGTC
CAAGGACCTCCGCAGGTTGGAAAGTCGCTGCTGATAAAGTGTCTAGTAAAGCACTACACT
AAACAAAACTTGTCAGATGTCCGTGGTCCCATCACGGTTGTATCAGGTAAAGCAGGAGGG
TGCAGTTCTTGGAGTGTCCAAGTGATATCAACGGAATGATCGATGCTGCTAAAATAGCAG
ATCTTGCTCTGCTGCTTATTGATGGTAGCTATGGAT

Homology of Contig U35_6379 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None