barSeed - Barley Seed Development Database

Probe CUST_8957_PI390587928

Source Contig U35_4969

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8957_PI390587928	Hv_44K_v2	CATCAGTTTCTTCTATAGGTGAAAACTTGCTGGTCATATATTGCATAGAGAGAATTCCTT	1703	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.312	1.782	1.096	0.766	0.400	0.392
Raw	529.301	651.932	344.964	379.072	68.782	74.901

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3970.1	4662	2e-24	4447 - 4506	100	60 / 60	plus	ABC12365 ABC44521
JLOC1	JLOC1_2403.1	4657	8e-25	4449 - 4508	100	60 / 60	plus
Harvest21	ABC12365	1851	3e-25	1705 - 1764	100	60 / 60	plus	ABC12365
Harvest35	U35_4969	1850	3e-25	1704 - 1763	100	60 / 60	plus

Contig Sequence (1850 bp)

>U35_4969 1850 Hv_44K_v2
ACAGCTTTCCATGAGCATCTATACAGGACACTTATTGAGCTCGGTCTGGATAATGAACTT
CTGGAGTACGGAGGCTCTGATTTGGTTGCTTTTCTTCAGAGTGCTGGTCGTAAGCATCAA
GAAGAGGTTCGAGGGCTCCTAGGTTGGATGATTTAGGTGCACCTATTTCTACTAGCCAAA
CGAAGTATCTTGAGCTCCTAGCAAGGTACTATGTTCTCAAGGGGGAGCATGTTGCTGCTG
CCAGGATGTTATTGATATTGGCGGAAAGGCAGTGCTCTAATGCCGAAGAAGCTCCTGCTC
TTGACCAGAGGTATCAATTTCTGAGCAACGCTGTGCTACAAGCCAAAAGTGCAGGCATTG
CTGCTGATTCGTCGAGAAATCCTATTGATAGTAGTACGGTGGATCTACTTGAAGGCAAAC
TTACAGTGCTTCGGTTTCAAATGCAAATCAAACAGGAATTAGAGTCTATGGCTTCACGGC
TTGAAGCTATCCCAGACAGTTCTGAATCACCCAGTGACCCCTTCCCGCGTGATAATATTC
TAGCTGATTTAGAATCTGCCAAGGAGGCCAAGGACAAGGCGAAAGAGCTTTCACTGAATC
TTAAGAGTATTACTCAACTATACAATGACTATGCTGTTCCATTTAATCTTTGGGAGGTTT
GCCTGGAAATGCTGAACTTTGCAAATTACTCTGGAGACGCTGATAGCAAAATTGTCCGGG
AAATTTGGGCCAGACTCCTTGACCAAACATTGACAAGAGGTGGTTTAGCAGAAGCATGTT
CTGTGGTGAAAAGAGTTGGCTCAAAACTAGATCCTGCAGATGGAGCTTGTTTACCTTTGG
ATATAATATGCCTTCATCTTGAGAAGGCTGCACTGGATAGATTAAGTTCAGGACAGGAAT
TAGTTGGTGATGAGGATGTTGCAAGGGCTCTTCTCGGAGCTTGTAAAGGTCTAGCTGAGC
CTGTGCTTGCTGTGTATGATCAGCTGTTATCGAATGGCGCAATCGTGCCCTCACTTACTC
TGAAGCTGCGGCTTCTGAGATCAGTTCTTGCAATCCTTCGAGAATGGGGAATGTCAGTCA
TTGCACATAAGCTAGGCACCACAACTGCCGGGGCTTCATTCTTTTTGGATGGAACATTCT
CGCTGAATCAAACAGGGTCTTTGCAGAAGGGTGTTCGAGATAAAATAATTAGTTTGGCGA
ACAGGTATATGACAGAGGTGAGGCGATTGAATCTCCCACAGAACCAAACAGATAATGTGT
ACCGAGTTTTCCGTGACCTAGAGGAGAAATTGTTATCTCCTTATTAGCCATTCTTTTTTT
TGTCCTCTCAACACTGTAAAGCCAAGACATCTTCAGGTGTTTGTTGTTGTACCAAGTATG
GGAATAAAGCCAAGACATCTTGATTCAACTGGACATTGATCTCTCATACGCTGTTTATCT
ATATAGTGGAATTTTGTGGAAGAACCCAAGAGGGGGCTCATCACGGATCAAATTGTCTGT
ACATGCAGCAATCCTTTGTTAAGTCAGCTTGGATCTGCAGAACTGCTGCCTGAATTTTGG
AAACTGAGCAGTCAACCTCATTTCTTTGCGTGTCACAAAGATATCGGTTTGTTACTGCAT
TGCTACCGTTTGATTGTGTTGTGATATGTGTGATGCGAGGTTTTACAGTTCCGCAGTTAA
ACGGTTCTTCAAGCTAGTTAGAACATCAGTTTCTTCTATAGGTGAAAACTTGCTGGTCAT
ATATTGCATAGAGAGAATTCCTTATTTAACATTGTCTTAATTTTTCTTGCCCTATTTGAC
ACTCGAAAACTTTTTCTTCCTTGTATAACACAGTCTAAATTTTATTCCTT

Homology of Contig U35_4969 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g20090.1	1476	0.0	protein\|NUP155, putative, expressed
Brachypodium v1_2	Bradi1g69510.1	1463	0.0
Arabidopsis v10	AT1G14850.1	1464	6e-110	\| Symbols: NUP155 \| nucleoporin 155 \| chr1:5116921-5123259 REVERSE LENGTH=1464