barSeed - Barley Seed Development Database

Probe CUST_8956_PI390587928

Source Contig U35_4970

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8956_PI390587928	Hv_44K_v2	TTCAGAGATGGGAAGTTCAAAGATGCATGGATTTCAAGTAGAAGCTGATTATCCGGAAGG	919	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365864	3794	2e-24	915 - 974	100	60 / 60	plus	ABC07103
MLOC	MLOC_72867.4	1342	2e-24	186 - 245	100	60 / 60	minus	None
MLOC	MLOC_72867.2	1383	2e-24	309 - 368	100	60 / 60	minus	None
MLOC	MLOC_72867.3	1371	2e-24	309 - 368	100	60 / 60	minus	None
MLOC	MLOC_72867.1	1455	2e-24	309 - 368	100	60 / 60	minus	None
JLOC1	JLOC1_48493.3	1485	8e-25	1004 - 1063	100	60 / 60	plus
JLOC1	JLOC1_48493.2	1416	8e-25	935 - 994	100	60 / 60	plus
JLOC1	JLOC1_48493.1	1536	8e-25	1055 - 1114	100	60 / 60	plus
Harvest21	ABC16575	1033	3e-25	974 - 1033	100	60 / 60	plus
Harvest35	U35_4970	979	3e-25	920 - 979	100	60 / 60	plus

Contig Sequence (979 bp)

>U35_4970 979 Hv_44K_v2
GGCTGGATTCGCATTCCCTCCCCTCCCCTCCTCCGACCCGCGCGGCGACGCTCGCACGCA
CGCAGATCGCCGCGGCGGCGCGCCCGGCGGCTCCGCTCCACTGCCAGGCAGTTCTGTGAC
TTTCAATGTCTTCCACAAGAAAAGTGAGAAATGTTAACAAGCGCTATGCCAAAATTAATG
AAGATTGGCCAGAAAAGGATGCAACGGTTGTACATAAAAATAAAGTGCGAAAGAAAAAAT
TATCCGACCTTGGTTCTCAGTGGAGCAAAGATGAGTTGGAGCACTTCTATGGAGCTTATA
GAAAATATGGAAAAGATTGGAGGAAGGTGGCTGGTGCGGTCCATGATAGAACATCTGATA
TGGTGGAGGCTCTTTACAACATGAATAGGGCATATTTATCTCTTCCAGAGGGAACTGCTA
CGGCTGCAGGGTTGATAGCGATGATGACCGATCACTATAATATTCTGGATGGGAGTAACA
GTGATCATGAGAGTAACGGTTCACCGAAAACTTCTAGGAAGCCACAGAAGCGTGGCCGTG
CAAAACTTCAGTCTGTGTCGAAGACATCTGATACACGTTACCCTGATCTACTGCAATCCC
AGCCTGCTTCATCGAGCTATGGATGCCTTTCTTTGTTGAAGAAGAAACGCTCTGGAGGTA
ACAAGCCACGTGCTGTTGGAAAAAGGACTCCACGAGTGCCTGTTGCAAGCATGTACCACC
GAGATGACAAGATAGGTCCATCAAATAGGCAAGCAAAACCAGACGCTAATAATGGTGATG
AAGAAGGTGCTCTAGCTGCTTTAGCTCTGGCAGAGGTCTGTCAAAGAGGAGGCTCGCCTC
AGGTTTCTCAAGCATCTGGAAGATCCAGTGGCCAAATGTTCCTGTCTCCTGGTAAAAGTA
TCGACAGAAAAAATGCAGATTCAGAGATGGGAAGTTCAAAGATGCATGGATTTCAAGTAG
AAGCTGATTATCCGGAAGG

Homology of Contig U35_4970 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g43800.2	1247	3e-152	protein\|DIRP family protein, putative, expressed
Brachypodium v1_2	Bradi3g01340.2	1159	3e-166
Arabidopsis v10	AT3G05380.2	1052	4e-67	\| Symbols: ALY2, ATALY2 \| DIRP ;Myb-like DNA-binding domain \| chr3:1540562-1546139 FORWARD LENGTH=1052