barSeed - Barley Seed Development Database

Probe CUST_8949_PI390587928

Source Contig U35_4977

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8949_PI390587928	Hv_44K_v2	AGCAGGGCATCTAACGGGCACTTGGTTGGGTAAGTTAAGATTTAAAAGTCGAAATGTTAC	1678	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.819	1.990	2.173	1.156	0.445	0.519
Raw	1173.541	4396.353	4147.567	3376.593	473.491	596.023

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC10753	1738	3e-25	1679 - 1738	100	60 / 60	plus	ABC10753
Harvest35	U35_4977	1738	3e-25	1679 - 1738	100	60 / 60	plus

Contig Sequence (1738 bp)

>U35_4977 1738 Hv_44K_v2
GATTAATGACAACATTTGAAGAAGAGAATGGCAGGGTAAATAGAATGGAAGGGGAAGCCT
CTAGAGAAAGGATATCAAAGGCAGAACCAAAGCATCAACATTCTCATCTAGAAAGGAGTG
ACAGTGCTACTTCTAATTTATCTTATGAAAATGTTCCTGGTGTTCACAAGATTAAAGAGG
TGTGCCAAGAAGCAGAAAGAGAATTACCCACAGAAAGATTTACAATATTCGAAGAAGAGA
AAAGCAGGGTAAATAAAATGGAAGGAAAGGTCTCTAGAGAAAGGATATCAAAGGCAGAAC
CAAAGCATCAACATTCTCATTTGGAGAAGAGTGACAGTGTACCAAAACCTGCAGAAAGGC
CATCCCCAGTTTCCGCTGAGTCGTCAGGAAAAGAGACACCTAGGGTTCAGAGAACCAAAG
AGAGGGGGAGTATAACAGAAAAAGGAGAGAAGAAGGACAAAGAGGCTTCTTGGAGACTGG
AAGAAGCAAAAGAAAGGCAAAAGATATTGGAGAAAGAAAGAGAAAATGCCGAAGTCAGTG
AAAGAAAAAAATTGGAAGAGGAGGAAAGGGAGAGGGAAAAGGAAAGGGAGAAGGATAAGC
TTGCTGTTGAAAGAGCCACAAGAGAAGCTCAGGCTGTTGAAAGAGCTATAAGAGAAGCTC
ATGAGAGGTCTTTTAATGAAGCTCGTGAAAAGGCAGAAAAAATGGCGCTGGAAAGGATTG
CTGCAGCACGGCAAAGGGCTTCTGCAGAGGCCCGGCTAAAAGAAGAGAGGGCAAATTCGG
AAGCTCGGATAAAAGCAGAACGGGCTGCAGTTGAGCGAGCAACTGCAGAAGCTCGGGAGA
GGGCGATTAAGAAGGCCAAGGCCGAGAAGGCTGCTGCAGAGGCAAGAGAACGCAGAGAAC
AAATCAGATCCTCTTCCAAGGATGTTCGACAGGACAATCAGTTTCAGAGGGCAACTTCCA
GTGGGTTCGTAAGAAACACAGATTCTAGTAGCAAAGTGGTTGATTCCGAGTCGGCTTTAA
GGCATAAGGCAAGAATAGAGAGACATCAACGTACAACTGAGCGTGTGTCAAAAGCACTTG
CGGAGAAGAACATGCGCGACCTGATGGCTCAAAGAGAACAGGCAGAGAAACATAGGTTGG
CTGATTTCCTGGACCCGGAGGTCAAGAGGTGGTCGAATGGAAAGGAAGGAAACCTGAGAG
CCTTGTTGTCCACTTTGCAATATATCCTTGGAGCCGACAGTGGCTGGCAGCCGGTGCCGC
TCACAGACCTCATCACAGCGGCCGCCGTGAAGAAAGCCTACAGGAAGGCGACTCTGTGCG
TCCATCCGGATAAGGTGCAGCAAAGGGGTGCGACAATCAGGCAGAAGTACATCTGCGAGA
AAGTCTTCGATCTTCTAAAGGATGCTTGGAACAAGTTCACCTCGGAGGAGCGCTAGGGTT
GATCGGTGATGGATGGATGGATGGATGGACGGAAGGCAGATTTCATTTTGCTAGTTGCAT
AGCCATATTGTTGGTTCTTTCCATTGGATATTGCTGTACATAGGCAGCTCGATCTAGGTA
ACCATTCTAGAGGGTAGAAGACTCGAAGTGGGTTCAGTTGGAAGAGAGAGCTCTGTTGTT
CTGGAAATGAATTTATGATGTTCCAGTCCAGACCTTGGTAGCAGTCAGTCAGTCCAGTAG
CAGGGCATCTAACGGGCACTTGGTTGGGTAAGTTAAGATTTAAAAGTCGAAATGTTAC

Homology of Contig U35_4977 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g50370.1	1424	2e-139	protein\|dnaJ domain containing protein, expressed
Brachypodium v1_2	Bradi2g14960.1	1418	2e-149
Arabidopsis v10	AT4G36520.1	1422	3e-70	Chaperone DnaJ-domain superfamily protein \| chr4:17230589-17235435 REVERSE LENGTH=1422