barSeed - Barley Seed Development Database

Probe CUST_8946_PI390587928

Source Contig U35_4980

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8946_PI390587928	Hv_44K_v2	CACACATGCAGAGAAAAATGTAATTATTTGCCCACATGGGGACTGAGTGATCGATTTTTT	1176	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.326	1.310	1.405	1.255	0.788	0.888
Raw	46.061	294.961	259.756	358.709	80.073	98.953

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70646.2	3826	9e-22	3188 - 3242	100	55 / 55	plus	ABC04687 ABC12043
MLOC	MLOC_70646.1	3772	9e-22	3324 - 3378	100	55 / 55	plus	ABC04687 ABC12043
JLOC1	JLOC1_46891.1	3550	5e-22	2959 - 3013	100	55 / 55	plus
Harvest21	ABC12043	1188	3e-25	1108 - 1167	100	60 / 60	plus	ABC12043
Harvest35	U35_4980	1257	3e-25	1177 - 1236	100	60 / 60	plus

Contig Sequence (1257 bp)

>U35_4980 1257 Hv_44K_v2
CAGGAACCACTCCGTCCCGGCCTTCCTCTTCTCCAGCGGCGGGTTCGCGGGCAACCTGTA
CCACGACTACACGGACGTGCTCGTCCCGCTCTTCACCAGCACCCACCACTTCGGCGGCGA
GGTGCAGTTCCTGCTCACCGACATCAAGGACTGGTGGCTCGACAAGTTCACGCCGCTCTT
CCGCCAGCTCTCCAACTACGACGTCATCGACGTCGACAACGACCAGGAGGTGCACTGCTT
CCCGCGCATCGTCATCGGCTCCACCTTCCACCGCCCCATGGGCATCGACGGCACCCGCTC
CCCGGGCGGCGAGACCGTGGCCGACTTCAAGCGCCTGCTCCGCCGCGCCTTCCGGCTCGA
CCGCGTGGTGGCATCCCACGACGGGTCGGCCAGCCTCGGCAAGCCGCGGCTCCTCATCAT
CTCCCGCAAGTCGTCCCGCCGGTTCCTCAACGAGCGCGCCATGGCGCACGCCGCCGCGCT
GGCGCAGTTCGACGTGCGCATCGCGGAGCCGGACAACCACACGGACATGCCAAACTTCGC
GCGGCTGGTGAACTCGGCGGACGTGATGATGGGGGTGCACGGCGCCGGGCTGACCAACAT
GGTGTTCCTCCCGAGCCGGGCCGTGCTGCTGCAGGTGGTGCCGTTCGGAGGGCTGGAGTG
GCTGTCCCGGGTGACCTTCAAGGACCCGGCCAAGGACTTCGACGTGACCTACATGGAATA
CAACGTGTCGCTGGAGGAGAGCTCGCTCAAGAACCTCTACCCCAAGGACCATTTCTACCT
GCAGCACCCCTACGACGTGCACAAGAAGGGATGGAACGCCATTAAGACCGTCTACCTCGA
CAAGCAGAGCGTCCGGCTCGACCTCGCCAAGCTGACGCGCACGCTCGAGCACGCGCGCAG
CCTACTGCCCTCCTCATCCTCGCACTGACAGTGAGCTCTGCTTGCATCACCCTGCAAGTT
CGGTTTCTCCATGATAGATTAGGCCCTCTTCTTCTCTCCCATGTTTGGTTCACTTCCCTC
TTCTGATTTGTTGTTGTTGTTGTGGTGGTGGCAAAGATTCATTTCTTTTCTTTTCTTTTT
TATTGGTAAAGGAGGAGACGAACAAGTTCGTGTCAAGCATAGCCCAAAGGTTAATTTACA
CTCTGTAAATTCGATTGATTGTCCCAGCAGCCAGCACACACATGCAGAGAAAAATGTAAT
TATTTGCCCACATGGGGACTGAGTGATCGATTTTTTTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g49320.1	461	1e-179	protein\|glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g34670.1	456	7e-178
Arabidopsis v10	AT3G18180.1	470	1e-75	Glycosyltransferase family 61 protein \| chr3:6230270-6231878 FORWARD LENGTH=470